Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18540 516 / 1e-179 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013937 [exp] 748 / 0 AT4G18540 549 / 0.0 unknown protein Lus10036093 [exp] 634 / 0 AT4G18540 621 / 0.0 unknown protein Lus10036092 [exp] 179 / 9e-54 AT4G18540 120 / 1e-32 unknown protein Lus10000522 [exp] 99 / 2e-24 AT4G18540 90 / 8e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054500 [exp] 690 / 0 AT4G18540 593 / 0.0 unknown protein Potri.011G064300 [exp] 687 / 0 AT4G18540 547 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008576 pacid=23161012 polypeptide=Lus10008576 locus=Lus10008576.g ID=Lus10008576.BGIv1.0 annot-version=v1.0 ATGTTGAGCCCTACATCCAGATTCTCCAGTTGCAGAGGAGTCTCATTCGAGATCAAACCCCGCACCTCCGATCCCTTCGCCATCCCCAACCAACCAAACG GCGAAACAACATTGCCTGGCGACGTTGTCACGCGCTTCTCCGTCTCGTCATGGATCCAATCCCCGTCATCCTCCAAACCGGGCCTCTCCGATTTCGTCCG GCGATCATTCAGCATCGCCACCAGCAGCCATTTTTGCGACCTCGACCTCGGTCCAGACGAATCAGAGGTCGTCAGCGTCTTTCTCGCACGATTGGAAGAG GGGACATTCGAAGGAGAAATTAGTAGTGAACAACAGCAACCTCCCCCACGCGCCGCTGCGGCAGCGGCCAAGAAGGAGTCGTCGTCCAGGCTGTCAATCA TATTATTTGACCAGGGTCTTTTCACGGTGTACAAGCAGTTATTCGCCGTTTGTTTCACGTTAAACGCCGTCGGATTAGTAACGGCGTCAACGGGACATTT TCCTTACGCGAGAGACAGAGCTGCTCTGTTTTCTATTGGGAATATATTTGGTCTCACTCTTTGTAGGAGCGAGCTGTTCTTGCGGGCCGTGTTTTGGGCC GCGGTTAAGTTATTCGGCCACTCGTGGGTCCCGATATGGATGAAAACATCAGTCACTTCGCTTCTTCAGAGTCTCGGTGGGATTCATAGTGGTTGCGGAG TGTCCTCTGTGGTGTGGCTGGTTTACGGTTTGGGGCTTGCCGTGAACGACAGAGCTAACACATCGTTCGAGAGTATTATAATGGCTTGGGTCATTCTATC GCTCATCTCCTTATCGTGCCTTGCCGCGTTTCCCCTAGTTCGACATCTACATCACAATGTGTTCGAGAGGACCCATAGATTCGCCGGATGGATTGCTCTA GGATTTCTTTGGTGGTTCGTTATGCTCACGGTTTCTTACGAGCCGAAAACAACAACATACAGTACTCGCCAAATGGGGACAAAATTAGTCAGGTCGCAAG AATTTTGGTTCACACTAGCTATTACAATACTAATCATAACACCATGGCTAACAGTGAGAAAAGTATCTGTAAAATGCACCTCGCCTTCCGGCCACACGAC CCTAATCAAATTCCCAGGAGGAGTCAAACCCGGAATCCTAGGTCGAATCAGCCCGTCTCCCCTATCTGAATGGCACGCTTTCGGGATCATCTCCGATGGA AAAACCGAGCACATGATGCTATGTGGTGCAGTAGGCGACTTCACGAAATCCCTAGTCTCCAACCCCCCAACCCATTTGTGGGTTCGACAGGTCCACTTCG CCGGACTTCCTTACCTAGTGAACATGTACGACAGGGTTTTACTCGTCGCGACAGGATCAGGGATCTGCGTGTTCTTGTCCTTCTTATTGCAACAGTGCAG GGCAAACGTATGTGTTCTCTGGATAGCCAAAGGGATTGAACAAAATTTCGGGCATGAGATTAAGGAAATGATGACCAGGCATCCAAAAGACAAGGTGATT GTACATGATACGGCTCTGATGGGACGTCCCAATGTGTCAAAATTAAGTGTGGATGCTGCCAAGAAATGGGGAGCTGAAGTTGTCGTTGTTACTAGCAATC CTGAAGGGAGTCGAGACGTTGTCAATGCATGCAAAGGTGCTGGGATTCCGGCTTTTGGTCCAATTTGGGATTCCTAA
AA sequence Show only first row Show all	>Lus10008576 pacid=23161012 polypeptide=Lus10008576 locus=Lus10008576.g ID=Lus10008576.BGIv1.0 annot-version=v1.0 MLSPTSRFSSCRGVSFEIKPRTSDPFAIPNQPNGETTLPGDVVTRFSVSSWIQSPSSSKPGLSDFVRRSFSIATSSHFCDLDLGPDESEVVSVFLARLEE GTFEGEISSEQQQPPPRAAAAAAKKESSSRLSIILFDQGLFTVYKQLFAVCFTLNAVGLVTASTGHFPYARDRAALFSIGNIFGLTLCRSELFLRAVFWA AVKLFGHSWVPIWMKTSVTSLLQSLGGIHSGCGVSSVVWLVYGLGLAVNDRANTSFESIIMAWVILSLISLSCLAAFPLVRHLHHNVFERTHRFAGWIAL GFLWWFVMLTVSYEPKTTTYSTRQMGTKLVRSQEFWFTLAITILIITPWLTVRKVSVKCTSPSGHTTLIKFPGGVKPGILGRISPSPLSEWHAFGIISDG KTEHMMLCGAVGDFTKSLVSNPPTHLWVRQVHFAGLPYLVNMYDRVLLVATGSGICVFLSFLLQQCRANVCVLWIAKGIEQNFGHEIKEMMTRHPKDKVI VHDTALMGRPNVSKLSVDAAKKWGAEVVVVTSNPEGSRDVVNACKGAGIPAFGPIWDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18540			unknown protein		Lus10008576 [exp]	0	1
AT4G01575			serine protease inhibitor, Kaz...		Lus10010094 [exp]	9.0	0.7051
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	19.8	0.6977
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	24.2	0.6415
AT4G31880			unknown protein		Lus10026078 [exp]	41.2	0.6653
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	52.3	0.6639
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	58.0	0.6609
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	60.3	0.6607
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	62.6	0.6607
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	64.8	0.6607
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	66.9	0.6607

Compare expression of checked genes

Lus10008576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.