Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29510 551 / 0 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT2G19670 520 / 0 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G20020 224 / 4e-68 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT3G12270 197 / 2e-56 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT5G49020 155 / 8e-42 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G06930 153 / 1e-40 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT1G04870 149 / 2e-40 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000982 [exp] 600 / 0 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 594 / 0 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 220 / 2e-67 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 219 / 6e-66 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10008664 [exp] 183 / 4e-51 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 181 / 3e-50 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10043412 [exp] 151 / 7e-40 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 151 / 7e-40 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043295 [exp] 145 / 7e-39 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149400 [exp] 553 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 553 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 227 / 2e-69 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 192 / 2e-54 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.010G014600 [exp] 158 / 2e-42 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 154 / 4e-41 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.018G071200 [exp] 150 / 5e-41 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.014G004000 [exp] 87 / 2e-19 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.003G076500 [exp] 59 / 6e-09 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05185 [flax] [poplar] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008577 pacid=23160989 polypeptide=Lus10008577 locus=Lus10008577.g ID=Lus10008577.BGIv1.0 annot-version=v1.0 ATGGCGCTACGGGAGAATGGCACCATTAGCTCAACCAGTCACTCCAATGCCCGGTTCCAAGATGCAGATGAGGATCCAGCTATTCACAGCTCCATTCTCG ATGTCTCTTCCACTATTCCCAGCGACAAAACCGTTGCTATGGACGACGACTCCATGTCCGAAGCCGACGCAACTGGCCCCAATTACGACGCCGGTCTAAC CAGCGCTGATTATTACTTCGATTCCTACTCCCACTTTGGCATTCACGAAGAAATGCTGAAGGATGAGGTGAGGACAAAGACATACCAAAATGTTATTTAT CAGAATAAGTTCCTATTCAAGGACAAAGTGGTGCTTGATGTTGGTGCTGGGACTGGTATTTTGTCCTTGTTCTGTGCTAAAGCTGGAGCAGCACATGTTT ATGCGGCAAGTAAACTAAATAGTGCTGCTAATGTATGGACTTCTAGGTTGAGTGCTCGAACATGGCCAACACTGCAAAGGAAATTGTTGAATCTAATGGT CTATCTGATGCATGTGTTTTGTGTCTCTTTTGTAACTGTTCTGAAGGGAAAGATTGAGGAAATAGAGCTCCCAGTTAGTAAAGTGGATGTCATCATTTCA GAGTGGATGGGATACTTTCTCTTGTTTGAGAACATGTTGAACTCTGTGTTATTTGCACGTGATAAATGGCTTGCCGATGATGGAATTGTGCTACCTGACA AAGCTTCTCTTCATTTGACAGCCATTCAGGATGCGGATTACAAAGATGATAAGATTGAATTTTGGAATAACGTCTATGGCTTTGATATGAGCTGCATTAA GAGTCAAGCAATTATGGAACCTCTAGTTGATACTTGTGAACAAAATCAAATAGTTACAAACAGCCAACTTCTCAAGACTATGGACATCTCCAAGATGACC GCAGGTGACTGTTCGTTTACTGCTCCTTTCAAGCTTGTGGCTGGACGTAATGATTTCATCCATGCATTGGTTGCCTACTTCGATGTATCATTTACGAAAT GCCATAAACTGATGGGGTTTTCCACAGGCCCAAGATCAAGGGCAACACATTGGAAACAAACAATACTGTACTTAGAAGATGTGATAACCATATGTGAAGG AGAAGTGCTGACAGGAAGCATGACGGTTTCGCCAAATAAGAAGAATCCTCGAGACGTTGATATAATGGTCAAATATGCATTCAATGGGAAGCGCTGTGTT GTCTCCAGAACTCAGTACTACAGGATGCGGCTATCGTCGAGGGAGGTTAGGACCTCAGCTGGCCGACCAACGAATGTCAGTATGGCACCCACACCGGCGG ATGACTCACCAGCGTCGACAGCGATAGTTTGGCCAGTTCCCGGACGAAGGCAGCAGGTCCCTGATTTGGATATGCAGCGTTCAGGTGCCCGGAGGTCTCC TCAGCAAATTATGTAG
AA sequence Show only first row Show all	>Lus10008577 pacid=23160989 polypeptide=Lus10008577 locus=Lus10008577.g ID=Lus10008577.BGIv1.0 annot-version=v1.0 MALRENGTISSTSHSNARFQDADEDPAIHSSILDVSSTIPSDKTVAMDDDSMSEADATGPNYDAGLTSADYYFDSYSHFGIHEEMLKDEVRTKTYQNVIY QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAASKLNSAANVWTSRLSARTWPTLQRKLLNLMVYLMHVFCVSFVTVLKGKIEEIELPVSKVDVIIS EWMGYFLLFENMLNSVLFARDKWLADDGIVLPDKASLHLTAIQDADYKDDKIEFWNNVYGFDMSCIKSQAIMEPLVDTCEQNQIVTNSQLLKTMDISKMT AGDCSFTAPFKLVAGRNDFIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTILYLEDVITICEGEVLTGSMTVSPNKKNPRDVDIMVKYAFNGKRCV VSRTQYYRMRLSSREVRTSAGRPTNVSMAPTPADDSPASTAIVWPVPGRRQQVPDLDMQRSGARRSPQQIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	0	1
AT2G25100			Polynucleotidyl transferase, r...		Lus10008965 [exp]	2.4	0.8307
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	6.9	0.8104
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	10.6	0.7803
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	13.9	0.7837
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	19.0	0.7688
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	20.2	0.7384
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	20.7	0.7289
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	28.7	0.7576
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	41.0	0.7765
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	41.9	0.7627

Compare expression of checked genes

Lus10008577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.