Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29490 768 / 0 Metallopeptidase M24 family protein (.1) AT1G09300 154 / 2e-41 Metallopeptidase M24 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032694 [exp] 882 / 0 AT4G29490 687 / 0.0 Metallopeptidase M24 family protein (.1) Lus10010905 [exp] 130 / 4e-32 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 126 / 2e-31 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10037379 [exp] 83 / 5e-19 AT4G29490 59 / 3e-11 Metallopeptidase M24 family protein (.1) Lus10004479 [exp] 43 / 0.0006 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149500 [exp] 827 / 0 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1) Potri.013G007100 [exp] 140 / 3e-36 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24 CL0356 [flax] [poplar] AMP_N-like PF05195 [flax] [poplar] AMP_N Aminopeptidase P, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008578 pacid=23161005 polypeptide=Lus10008578 locus=Lus10008578.g ID=Lus10008578.BGIv1.0 annot-version=v1.0 ATGGCTCCGGCTCTGTCTCCGCCTGGAGTCCCCATGGAGCTCTACGTCTCCAACCGCGAGAAGCTTATCAAATCCATCCACCAGCATCTCACCGAAGCTT CTCGTCCTCTTCAGGGCTTCGTCCTTCTTCAGGGAGGTGAAGAACAGACTCGTTACTGCACAGATCATTCAGAGCTCTTCAGGCAGGAGAGTTACTTCGC CTATTTGTTTGGAGTTGTGGAGTCTGGTTTCTACGGAGCTATTGACATCTCAACAGGGAAGTCTATCCTCTTTGCTCCCAGACTACCTGCTGAGTATGCT GTTTGGATGGGAAAAATTAAGCCACCATTGTACTTTCAGGAGAAATACCAAGTCAACGCAGTATACTACACAGATGAAATTGTAGAAGTTTTGCATGACC ATAGCAAGGGAGTTGAGAAGCCGTTACTGTTTCTCTTGCATGGACTGAACACTGACAGCAACAATTACTCAAAACCAGCAAGTTTTAAGGGAATGGAAAC ATTTGAAACTGACCTAAATGTTTTGCATCCTATTTTAACTGAATGTCGTGTCATCAAGTCAGACCTAGAGCTTGCTGTAATTCAGTTTGCCAATGATATA AGCTCAGAGGCTCATGTTGAGGTTATGAGAAACTGTAAAGCCGGAATGAAAGAGTATCAGTTGGAAAGTACATTTCTACACCACACCTACATGTATGGTG GCTGTCGACATTGCTCATACACATGCATCTGTGCTACTGGTGATAACAGTGCTGTTCTTCACTATGGCCATGCAGGAGCCCCTAATGACAGGACCTTGCA AGATGGAGATATGGCACTGTTCGATATGGGAGCTGAATACCATTTCTATGGTTCTGACATAACTTGTTCATTTCCTGTGAATGGCAAGTTTACAAGTGAC CAGTCTTTAATTTACAAAGCTGTTCTTGATGCACACAATACTGTAATATCTGCTATGAAGCCAGGAGTCACCTGGATTGACATGCACAAGTTGGCAGAGA CGGTCATCCTTCAATCTTTGAAGACCGGTGGCATTATTGTTGGTAGCATAGAAGATATGATGGCTGAGCGATTTGGCGCTGTCTTCATGCCACATGGGCT GGGGCATTTCCTTGGACTTGACACCCATGATCCTGGTGCACATGTACTCCAGGGACTGAAGAAACCAACAGAACCAGGATTAAGTTCTTTGCGTACCATT AGAGAACTCAAAGAGGGGATGGTAATAACGGTAGAGCCAGGCTGCTATTTCATCGATGCTTTGCTGACCCCAGCAATGACAAACCCAAAAACTTGCAAGT TCTTCAATGCTGAGGCCATCGGGAGATTCAAAGGCTTTGGCGGTGTTCGCATTGAAAGTGATCTGCATGTTACGGCCGATGGGTGCAAGAACATGACTAA TTGTCCAAGGGAGGTTTCAGATATTGAAGCAGTAATGGCAGGAGCGCCTTGGCCGGCCAACCAGCCAAGCCTTTAA
AA sequence Show only first row Show all	>Lus10008578 pacid=23161005 polypeptide=Lus10008578 locus=Lus10008578.g ID=Lus10008578.BGIv1.0 annot-version=v1.0 MAPALSPPGVPMELYVSNREKLIKSIHQHLTEASRPLQGFVLLQGGEEQTRYCTDHSELFRQESYFAYLFGVVESGFYGAIDISTGKSILFAPRLPAEYA VWMGKIKPPLYFQEKYQVNAVYYTDEIVEVLHDHSKGVEKPLLFLLHGLNTDSNNYSKPASFKGMETFETDLNVLHPILTECRVIKSDLELAVIQFANDI SSEAHVEVMRNCKAGMKEYQLESTFLHHTYMYGGCRHCSYTCICATGDNSAVLHYGHAGAPNDRTLQDGDMALFDMGAEYHFYGSDITCSFPVNGKFTSD QSLIYKAVLDAHNTVISAMKPGVTWIDMHKLAETVILQSLKTGGIIVGSIEDMMAERFGAVFMPHGLGHFLGLDTHDPGAHVLQGLKKPTEPGLSSLRTI RELKEGMVITVEPGCYFIDALLTPAMTNPKTCKFFNAEAIGRFKGFGGVRIESDLHVTADGCKNMTNCPREVSDIEAVMAGAPWPANQPSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	0	1
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	1.4	0.9118
AT5G05360			unknown protein		Lus10012213 [exp]	2.2	0.9035
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	3.5	0.9102
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	4.2	0.8844
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	8.5	0.9054
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	11.3	0.8865
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	11.6	0.8866
AT3G11290			unknown protein		Lus10002039 [exp]	11.8	0.8916
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	13.8	0.9116
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	15.4	0.8983

Compare expression of checked genes

Lus10008578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.