Plant FIBer expression Database

Lus10008580 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06950 719 / 0 ATTIC110, TIC110 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042231
[exp]
1274 / 0 AT1G06950 927 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G154300
[exp]
773 / 0 AT1G06950 1258 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Potri.019G127000
[exp]
771 / 0 AT1G06950 1278 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
PFAM info
Representative CDS sequence
>Lus10008580 pacid=23180088 polypeptide=Lus10008580 locus=Lus10008580.g ID=Lus10008580.BGIv1.0 annot-version=v1.0
ATGGAGGAAAATATCTCAGATGCACGTGATATACTGAAAACTAGATCAAGAGCAGCCACTGGTTTGAAGGAGGCAGTTGGTGCAATTGATGCGGTACTGG
CATTCAATGATAGGCTTATTTCCTTCAAGGACCATGCAGATGCTGATCGATTTGCTCGAGGAGTTGGTCCAGTTTCTCTATTAGGTGGTGAGCATGATAC
AGATAGAAAGATTGCTGACTTGAAGCTTCTATACAAAGCTTACGTCACAGATGCTTTATCCGGTGGTCGGATGGATGATAGTAAGGTTGCTTCACTGAAC
AAGTTAAGGGTTATATTTGGGTTGGGTACAAAAGAATCAGAGACAATTACACATGAGGTTACCTCAAAAGTCTACCGGAAACGACTTGGACAAGCATTTA
CCGGAGGTGATTTGGAGATGGCAGATAGCAAGGCAGCCTTCTTGCAGAATCTTTGTGAGGAATTGCGCTTTGATCCACTGAAGGCAAAAGAGGTTCATGC
AGATATATACCGCCAGAAGCTTCAACAATGCTTAGCTGATGGAGAGCTCAGTGAGGCAGATGTCAAAAGTCTGCTACGAGTGAGAGTCATGCTCTGTATT
CCTGAAGAAACAGTTGAAGCGGCTCATACTGATCTATGCGGCACTTTATTTTCCAAGGCGGTCATGGATTTGGTTGGCTCAGGTGCTGATGGTTACAGTG
AGAACGCTATGGAGGCTGTTAAAAAGGCTGCCCGTCAACTAAAGTTATCGCGGGAGGCCGCTATGACTATTGCAAGCAGGGATGCCAAAAAGGTCCTCTT
GACTTATGTAAAACGAGCTCGTGCAGCGGATGACCGCGAAAAGGCAGCTGAACACCTGAAGAAAATGGTTTTCTTCAATTATTATGTCTTGACTCGATTG
GTTGCTGGTATTAAAGGGAAATCTGCTGATGATCAATCCGAAGAGCCTGTAAAGGAGGCAAAGAAACTAACCGAGGATGGATGGGAATCACTGGCATCGC
TTAAGAAAATGAAGCCTAGCGGGGAAGTTCCTCCAGGAGCAGAGCCTGCACAGACAGGGATAAACCTTAAAGATGACCTCCCTTTAAGAGACAGGACTGA
CTTATTCAGAAAATACTTGATATTCTGCCTTACTGGTGAAGTCCAAGTTCTTCCCTTTGGTGCTTCGACCAAACCGGGCGAGTCGGAATTTGTAAAACCG
GGCGAGTCGGAATTCGTATTCCTGACTCGGCTGGGAGAAATCTTGGGATTGACCGATGAGGAAATCGTGCCCGTGCACAAGGAAGTTGCAGAAATTACCT
TCAAGAAGCAAGCTGAAGTGATTTTAGCTGACGGGAAACTCACTAAATCCAAGATGGATCAACTTGAAGATGTCCGAAAGCAACTTGGATATCCGGAAGA
GCATGCTCAAAAGGTGATTAAGCACATTACCAGCACGAAAATGGCTACTGTACTTGAAACTGCTATCGGTAAAGGGCAGCTCGATATAAGGCAGATGAGA
GAACTGAAGAAGTCAAAGGTAGACGTCGACAACATGATCTCTGAGAAGCTTAGGGAGAGCCTGTTCAAAAAAACCGTGGACGAGATATTCTCATCTGGCA
CTGGAGAATTCGACGAGGTGGAAGTCTACGAGAGGTTGCCAGCAGACTTGAACATCAACCCCGAGAAGGCCAAGGAGGTTGCTCGTCAACTTGCACAGAA
CAGATTGTCAAACTCGCTGATTCAGGCTGCGTCACAGTTGCGGCAAAGGAACCACACTGGAGCTGTTTCGGCCCTCAACAATATGATAGCGGCTGACAAA
GCTGTTCCAGCAGAGGCACCATTGAACTGGGAAGTTGCACAGGAGCTGGATGTCCTTTACACTGTCTATCTGAGGAGTGACCCACCGGCCGAAAAGCTGT
CTCGGCTGCAGTATTTACTGGGGATAAGCGACTCCGAGGCTGATGCCCTGCGAGGCATGAAACATCAATCGCTCTCTCCAGGGGCAATAGAGGAGGAAGA
GGAGAAATTCGTGTTCTGA
AA sequence
>Lus10008580 pacid=23180088 polypeptide=Lus10008580 locus=Lus10008580.g ID=Lus10008580.BGIv1.0 annot-version=v1.0
MEENISDARDILKTRSRAATGLKEAVGAIDAVLAFNDRLISFKDHADADRFARGVGPVSLLGGEHDTDRKIADLKLLYKAYVTDALSGGRMDDSKVASLN
KLRVIFGLGTKESETITHEVTSKVYRKRLGQAFTGGDLEMADSKAAFLQNLCEELRFDPLKAKEVHADIYRQKLQQCLADGELSEADVKSLLRVRVMLCI
PEETVEAAHTDLCGTLFSKAVMDLVGSGADGYSENAMEAVKKAARQLKLSREAAMTIASRDAKKVLLTYVKRARAADDREKAAEHLKKMVFFNYYVLTRL
VAGIKGKSADDQSEEPVKEAKKLTEDGWESLASLKKMKPSGEVPPGAEPAQTGINLKDDLPLRDRTDLFRKYLIFCLTGEVQVLPFGASTKPGESEFVKP
GESEFVFLTRLGEILGLTDEEIVPVHKEVAEITFKKQAEVILADGKLTKSKMDQLEDVRKQLGYPEEHAQKVIKHITSTKMATVLETAIGKGQLDIRQMR
ELKKSKVDVDNMISEKLRESLFKKTVDEIFSSGTGEFDEVEVYERLPADLNINPEKAKEVARQLAQNRLSNSLIQAASQLRQRNHTGAVSALNNMIAADK
AVPAEAPLNWEVAQELDVLYTVYLRSDPPAEKLSRLQYLLGISDSEADALRGMKHQSLSPGAIEEEEEKFVF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Lus10008580
[exp]
0 1
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10030158
[exp]
2.4 0.8453
AT3G51140 Protein of unknown function (D... Lus10041816
[exp]
2.6 0.8919
AT1G02280 PPI1, ATTOC33, ... PLASTID PROTEIN IMPORT 1, tran... Lus10009860
[exp]
3.7 0.8445
AT1G79560 EMB36, EMB156, ... EMBRYO DEFECTIVE 36, EMBRYO DE... Lus10031169
[exp]
5.8 0.8751
AT5G64050 ATERS, ERS, OVA... OVULE ABORTION 3, glutamate tR... Lus10012512
[exp]
7.5 0.8548
AT1G79560 EMB36, EMB156, ... EMBRYO DEFECTIVE 36, EMBRYO DE... Lus10031745
[exp]
8.3 0.8641
AT1G49510 EMB1273 embryo defective 1273 (.1) Lus10027929
[exp]
9.5 0.8225
AT3G13470 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn6... Lus10010321
[exp]
11.0 0.8470
AT4G36790 Major facilitator superfamily ... Lus10041712
[exp]
13.4 0.7647
AT1G09795 HISN1B, ATATP-P... ATP phosphoribosyl transferase... Lus10003685
[exp]
14.9 0.8052

Lus10008580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.