Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 331 / 1e-113 Peroxidase superfamily protein (.1) AT5G58400 307 / 4e-104 Peroxidase superfamily protein (.1) AT5G58390 296 / 5e-100 Peroxidase superfamily protein (.1) AT1G14540 294 / 3e-99 Peroxidase superfamily protein (.1) AT1G14550 291 / 4e-98 Peroxidase superfamily protein (.1) AT4G36430 265 / 1e-87 Peroxidase superfamily protein (.1) AT5G06720 262 / 3e-86 ATPA2 peroxidase 2 (.1) AT2G18140 260 / 1e-85 Peroxidase superfamily protein (.1) AT1G44970 258 / 1e-84 Peroxidase superfamily protein (.1) AT2G18150 257 / 3e-84 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009935 [exp] 407 / 2e-143 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10009936 [exp] 381 / 3e-133 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10030145 [exp] 370 / 2e-128 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10034207 [exp] 326 / 1e-111 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10006534 [exp] 325 / 2e-111 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 323 / 4e-109 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10032786 [exp] 316 / 9e-108 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 312 / 2e-106 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10025255 [exp] 305 / 3e-103 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156800 [exp] 362 / 9e-126 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 338 / 2e-116 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 330 / 3e-113 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 319 / 6e-109 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 316 / 1e-107 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 313 / 1e-106 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 313 / 2e-106 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 312 / 2e-105 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 310 / 2e-105 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 310 / 2e-105 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008581 pacid=23180074 polypeptide=Lus10008581 locus=Lus10008581.g ID=Lus10008581.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTCGCACAAGCACAACTGTCTCCTACTTTCTACAAGAAAACTTGCCCCAACCCTCTTCCCGCCATTAGACGGATCGTTAGGCAAGCCATCC AGAAGGAGGCCCGAATGGGCGCCTCCTTGCTCCGGTTGCATTTCCACGATTGCTTCGTCAATGGGTGTGACGGGTCGGTGCTGCTGGATGACACTAAGAA TTTTACGGGAGAGAAGACGGCTGGGGCGAATGCGAACTCGGTTAGAGGGTTTGATGTGATTGATAAGATCAAGTCGGAACTTAACAAAGTTTGTAAGGGC AATGTCGTCTCTTGCTCCGACATTCTGGCTGTGGCTGCTCGTGACTCGGTTTATATTCTAGGAGGACCTTCGTACTTCTATCGGCTCCCCTTAGGAAGGC GTGACAGTAGGACCGCGAGCCTAAACGCAGCAAACAACAACCTCCCAGCACCATTCTTCAGCTTCTCCCAGCTCGTCTCGAGCTTCCAGTCCCAAGGCCT GAACACGAAGGACCTCATTGCACTCTCTGGGGGGCACACTATCGGACAGGCTAGGTGCACCCTGTTCCGTACCAGGGTACACAACGACACCAACATAGAC CGCAACTTCGCCTCCTCCGTGAAGCGAACTTGCCCCTCTGTGACGGGCAAAGGGGACAACAACGCCCAACCACTTGACCAGAGCCCTGCAAGGTTCGACA CACAGTACTATAGGGCTCTGGTCCAGAAGAAGGGGTTGTTACATTCAGACCAGGAGCTGTTCGGGACAGGGAATAAAGCCAGTGATGCTTTGGTTCGGTT GTATAGCAACAACCCGAGCAAATTCGCCAAGGATTTCGGAGTTTCGATGATCAAGATGGGGGGTATTAAGGTTCTCACTGGGACGAGAGGGGAGGTTAGG AAGAACTGCCGCAGGATTAACTAA
AA sequence Show only first row Show all	>Lus10008581 pacid=23180074 polypeptide=Lus10008581 locus=Lus10008581.g ID=Lus10008581.BGIv1.0 annot-version=v1.0 MAAVAQAQLSPTFYKKTCPNPLPAIRRIVRQAIQKEARMGASLLRLHFHDCFVNGCDGSVLLDDTKNFTGEKTAGANANSVRGFDVIDKIKSELNKVCKG NVVSCSDILAVAARDSVYILGGPSYFYRLPLGRRDSRTASLNAANNNLPAPFFSFSQLVSSFQSQGLNTKDLIALSGGHTIGQARCTLFRTRVHNDTNID RNFASSVKRTCPSVTGKGDNNAQPLDQSPARFDTQYYRALVQKKGLLHSDQELFGTGNKASDALVRLYSNNPSKFAKDFGVSMIKMGGIKVLTGTRGEVR KNCRRIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	0	1
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	4.9	0.9140
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	5.6	0.9197
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	6.3	0.9058
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	9.1	0.8344
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	9.3	0.9185
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	9.8	0.9080
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	13.2	0.9012
					Lus10002087 [exp]	17.1	0.9003
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	17.2	0.8980
AT1G47980			unknown protein		Lus10037797 [exp]	17.2	0.8623

Compare expression of checked genes

Lus10008581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.