Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 517 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 491 / 3e-173 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45820 419 / 3e-145 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 407 / 6e-141 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G30960 382 / 2e-130 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT4G18700 380 / 3e-129 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT1G30270 379 / 9e-129 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G45810 377 / 6e-128 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G10930 375 / 6e-128 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 376 / 1e-127 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042229 [exp] 703 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 471 / 4e-165 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 454 / 1e-158 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 414 / 1e-142 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 395 / 6e-136 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 394 / 4e-135 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10028115 [exp] 390 / 2e-133 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 389 / 3e-133 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10024448 [exp] 385 / 5e-131 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127500 [exp] 545 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 543 / 0 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 518 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 482 / 5e-170 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 436 / 8e-152 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 399 / 3e-137 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 399 / 1e-136 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 390 / 2e-133 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G108500 [exp] 388 / 5e-133 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 382 / 2e-130 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008582 pacid=23180108 polypeptide=Lus10008582 locus=Lus10008582.g ID=Lus10008582.BGIv1.0 annot-version=v1.0 ATGAGAATTGCTAGGCACCCTAATGTTCTCCAGCTTTATGAGGTCATGGCGACCAAAAGCAAGATTTTCTTTATCGTGGAGTATGCTAAAGGTGGCGAGC TCTTCAACAAGGTTGCTAAAGGAAGGTTGAAAGAGGATGCTGCTCGTAAATATTTCCAGCAGCTGGTTAATGCTGTTGATTTCTGCCACAGTAGGGGTGT TTACCATAGGGATATTAAGCCGGAAAATCTGCTGTTGGATGAAAATGAGAACCTGAAGGTTTCAGATTTCGGATTGAGTGCCCTAGCTGAATCGAAACGT CAAGATGGTCTACTCCACACAACCTGTGGGACACCTGCATATGTTGCCCCTGAAGTTATCAACAGGAAAGGGTATGATGGAGCGAAGGCTGATATCTGGT CTTGCGGAGTGGTTTTATATGTACTATTAGCAGGGTATCTTCCGTTTCATGATTCAAACCTGATGGAACTGTACAGGAAGATTGGAAAAGCTGAGTTTAA ATGTCCAAATTGGTTCGCTCCGGAAGCTCGCCGGCTTCTGAACAAGATATTGGATCCAAACCCGAATACAAGAATCTCCATGGCTAAGATCAAAGAAAGT TCCTGGTTTAAGAAAGGGTTGACCTCCAAGCTGATCAAACCTCCCGAAGAGGACAAAAGAAATGTGGCTCCTGTTGATGGTGATGGATCAGGTCCTTCAA GAACTTGTAGCTTACCCCGGGAGGAAAAGCCAGAACCTTCAGCCAAGCCTCCTAATGTGAATGCATTCGACATCATCTCCCTTTCAGCTGGGTTCGACCT CTCTGCGCTTTTCGAGGACGATATACAAAGAAGAGAAACGAGGTTTACTTCTAGACATCCTGCATCAGTCATCATTTCCAGACTGGAGGACACTGCCAAG TTTTTGAAAATGAAAGTGATGAAGAAAGAAGCCGGATTGTTGAGGATGGAAGGTATGAAGGAAGGTAGAAAGGGTCTTTTGTCCATAGATGCTGAGATCT TCGAAGTCACTCCAGACTTCCATCTGGTGGAAGTCAAGAAATCTAGCGGGGATACAATGGAGTATCAGAAGATCGTCAGAGACGGAATGCAACCGGCTCT CCACGATATTGTCTGGGTTTGGCAGGGCGAAAAGGAACCGCAACACGAAGAACAGCATCCGCCGCCACAGGAGCAGCAATAG
AA sequence Show only first row Show all	>Lus10008582 pacid=23180108 polypeptide=Lus10008582 locus=Lus10008582.g ID=Lus10008582.BGIv1.0 annot-version=v1.0 MRIARHPNVLQLYEVMATKSKIFFIVEYAKGGELFNKVAKGRLKEDAARKYFQQLVNAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKR QDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLYVLLAGYLPFHDSNLMELYRKIGKAEFKCPNWFAPEARRLLNKILDPNPNTRISMAKIKES SWFKKGLTSKLIKPPEEDKRNVAPVDGDGSGPSRTCSLPREEKPEPSAKPPNVNAFDIISLSAGFDLSALFEDDIQRRETRFTSRHPASVIISRLEDTAK FLKMKVMKKEAGLLRMEGMKEGRKGLLSIDAEIFEVTPDFHLVEVKKSSGDTMEYQKIVRDGMQPALHDIVWVWQGEKEPQHEEQHPPPQEQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	0	1
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	2.0	0.9374
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	2.4	0.9201
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	4.0	0.9096
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	6.5	0.9098
AT3G11810			unknown protein		Lus10037134 [exp]	6.9	0.9106
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	9.2	0.9013
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	9.4	0.9233
AT3G52220			unknown protein		Lus10039101 [exp]	9.8	0.9119
AT4G21450			PapD-like superfamily protein ...		Lus10018420 [exp]	10.1	0.8913
AT3G03330			NAD(P)-binding Rossmann-fold s...		Lus10026851 [exp]	10.7	0.8877

Compare expression of checked genes

Lus10008582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.