Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 157 / 8e-40 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 131 / 2e-31 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 77 / 2e-14 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46730 56 / 7e-08 NB-ARC domain-containing disease resistance protein (.1) AT1G69550 56 / 1e-07 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G46530 52 / 2e-06 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 45 / 0.0002 NB-ARC domain-containing disease resistance protein (.1) AT5G45520 45 / 0.0002 Leucine-rich repeat (LRR) family protein (.1) AT5G45500 45 / 0.0002 RNI-like superfamily protein (.1.2) AT5G45230 44 / 0.0006 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042117 [exp] 254 / 8e-73 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 241 / 7e-68 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 224 / 3e-62 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 202 / 2e-54 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 201 / 3e-54 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10006793 [exp] 196 / 1e-53 AT3G14460 127 / 4e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 179 / 9e-47 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 175 / 2e-45 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 159 / 3e-40 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272066 [exp] 313 / 9e-94 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 311 / 6e-92 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 302 / 1e-89 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 293 / 2e-86 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 228 / 2e-63 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 227 / 4e-63 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136400 [exp] 226 / 6e-63 AT3G14470 413 / 5e-128 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 226 / 1e-62 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 224 / 5e-62 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 224 / 5e-62 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008584 pacid=23180111 polypeptide=Lus10008584 locus=Lus10008584.g ID=Lus10008584.BGIv1.0 annot-version=v1.0 ATGTTGATTCATCTCTGGATTGCGCAGGGGTTTGTCTCCTCAAATAATCCGTGTCCGGAACAGACTGGATTTGAGTATTTTACAGATTTATTGTCAAGGT TTTTCTTCCAGGAGGTGGAAAAGGATATAACTGGAAATATACGAAGCTGTAAAATGCATGATCTAATGCATGACCTTGCCATCTCTCTGGACAAGAGTGA TGGTAGGGGGATTGACCATGAAAAGATCTATCATGTGTCATTTTACTCGGACCTGGACTCGTCCTGGAGAATTCCAGACAGTTTGATGAATAATGCCAAG CGTCTGAGAACCTTTCTTCTACCAATTGGTTTCTCAGATTCGAAGCATATATGGGAAGAGTCGAGGGGTGAAGAAATCTTCTCAAGTTTCAAGCGGCTGC GTGCATTGTATTTGAATGAGGTGCGGTTGGAATGTCTTTCACCTTCAGTGAAAAACTTGAAACATTTAAGATACCTTGGCTTTTCCAGTAATGATTCAAT CAGGATCCTTCCTGATTTCATCACCCAGCTCTACAATCTTCAAGTTCTCAACCTATCCTCTTGCGACCAGCTTCAGCAACTCCCTGTGAACTTGAGAAAT CTTGTGAATCTAAGACATCTCTTGTGTGAGGGATGTTCCAAGTTGACCCACATGCCAAAAGGGATAGGGGAGTTAACCTCCCTCCAAACTCTGACCTGGT TTATAGTGGGGGAAGATAGTTTTGAATCGAAACATGTTGGTGGCTTGGATGAACTCATGGGGCTAAACAAGCTGAAAGGAAAGATAGAGATTAGAAATCT AGGATGTAAAATACCAGCTGCTGGGAGTGCCAATTTGAAGGCGAAGAAAGATGTTCAATCTCTGACCTTAAGTTGGAGAGAAGGGTGCGATTCCGTCGAT GATTCTGATGAAATTGCTAGCGCCCTTGATGGTGGACTAGCAGTTATGGAAAGCCTTCAACCACATTCTAACCTTAAAGTATTTAAAGTGGACCATTATG GTGGCGTGAGTTTTCCACCTTGGCTTTCTTACTTGACTAATCTGGTCGAGCTTTGGATTGAAGATTGTGCTTCCTGTAAGTATCTGCCACCTTTACATCA CATTCCTTCTCTCAAAGAACTTTGGATTAGTCAACTAGACTCACTTGAATATGTAGACAATGAAACCATGGAAAACTTGGAAGGATTTTCTGGAGCTGAT GGTTTTCCATTTCCATTCTTTCCCTCTCTTGAAAAACTATGGATATGCAACTGCACATCCCTGAAGGGGTGGTGGAAGATCAACAATGATGGTGATGGTG TTGAACATATGAGCTCAACAGTAGCGCTCCCACAGTTCCCTCGTCTGAGTCTGCTGGAAATAAACAACTGTCCCAATTTGACTCTGATGCCAAGCTTTCC CAGTTTGAGAGAGAGTCTCAGTTTGGATAAAACTGGCCGTGTCATGGTCCAGAAGGAAAATTTGGCTATTTCCAACGAGCTACCGGAGCTGGAAGAGATA AACAACATTGGGTTCTTGCCATTCCTGAATAAATTATGGGTCTGGCACTGTCAAAATCTCAAGACTTGGAGTTGCAATGACAATGCTGCTGCTAATATGG ACGGCCATTTCCCTCAAATATCGTTGTTGGAGATAAAGAACTGCCCCAACTTAAGTTGCATGCCACTGTTCCCTGCACTGGACGATGAGCTGCTTGTGGA GAACTCTAGCTTGGAGCCATTAAAACAGACGATGAAGATGACGAGGAAGAAGATGACGCCTCTGTCGAAACTGAAGAAGTTGTCGATCGTTGGAGTTGCA GATGTCGAATCTCTGCCTCAACAGTGGCTAAAAAATCTTAAATCTCTTCAAGAGCTGTACTTGAAGAAGTGTGATAGAATAAGATTGGTGCCTCAAGAAC TGAAACTGCTGCCTTGTTTGCAGAAGGTGCATATCAGCAGGTGTCCTGATATAAGGAACAGTGGAGGAGATTGGAGTGGCGTTACCGCTAATGCTCATGA CAACCCGATTGTTATTGAAGTCGATTGGTGA
AA sequence Show only first row Show all	>Lus10008584 pacid=23180111 polypeptide=Lus10008584 locus=Lus10008584.g ID=Lus10008584.BGIv1.0 annot-version=v1.0 MLIHLWIAQGFVSSNNPCPEQTGFEYFTDLLSRFFFQEVEKDITGNIRSCKMHDLMHDLAISLDKSDGRGIDHEKIYHVSFYSDLDSSWRIPDSLMNNAK RLRTFLLPIGFSDSKHIWEESRGEEIFSSFKRLRALYLNEVRLECLSPSVKNLKHLRYLGFSSNDSIRILPDFITQLYNLQVLNLSSCDQLQQLPVNLRN LVNLRHLLCEGCSKLTHMPKGIGELTSLQTLTWFIVGEDSFESKHVGGLDELMGLNKLKGKIEIRNLGCKIPAAGSANLKAKKDVQSLTLSWREGCDSVD DSDEIASALDGGLAVMESLQPHSNLKVFKVDHYGGVSFPPWLSYLTNLVELWIEDCASCKYLPPLHHIPSLKELWISQLDSLEYVDNETMENLEGFSGAD GFPFPFFPSLEKLWICNCTSLKGWWKINNDGDGVEHMSSTVALPQFPRLSLLEINNCPNLTLMPSFPSLRESLSLDKTGRVMVQKENLAISNELPELEEI NNIGFLPFLNKLWVWHCQNLKTWSCNDNAAANMDGHFPQISLLEIKNCPNLSCMPLFPALDDELLVENSSLEPLKQTMKMTRKKMTPLSKLKKLSIVGVA DVESLPQQWLKNLKSLQELYLKKCDRIRLVPQELKLLPCLQKVHISRCPDIRNSGGDWSGVTANAHDNPIVIEVDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10008584 [exp]	0	1
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	14.7	0.7061
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	16.9	0.6646
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10039063 [exp]	34.9	0.5847
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10021812 [exp]	35.7	0.6671
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	44.3	0.6566
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	46.5	0.6467
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	50.3	0.6602
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10031389 [exp]	66.1	0.6330
AT1G71140			MATE efflux family protein (.1...		Lus10028904 [exp]	82.5	0.6032
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029928 [exp]	83.9	0.5893

Compare expression of checked genes

Lus10008584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.