Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 526 / 2e-179 Protein kinase superfamily protein (.1) AT2G23770 315 / 4e-98 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 192 / 1e-52 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 183 / 3e-49 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT4G04570 151 / 2e-38 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2) AT3G01840 150 / 4e-38 Protein kinase superfamily protein (.1) AT1G61860 145 / 5e-38 Protein kinase superfamily protein (.1) AT3G58690 144 / 2e-37 Protein kinase superfamily protein (.1) AT4G04540 147 / 4e-37 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT1G14370 144 / 4e-37 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019661 [exp] 390 / 1e-126 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 390 / 2e-126 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 305 / 3e-94 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10042225 [exp] 284 / 1e-89 AT2G33580 209 / 5e-62 Protein kinase superfamily protein (.1) Lus10008105 [exp] 281 / 7e-85 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10032735 [exp] 212 / 4e-59 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 208 / 9e-59 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10021889 [exp] 207 / 1e-58 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 208 / 4e-58 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032100 [exp] 414 / 1e-135 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 412 / 3e-135 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 405 / 1e-132 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 324 / 1e-101 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 320 / 3e-100 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 244 / 2e-71 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 215 / 1e-60 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.014G156400 [exp] 200 / 1e-55 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.002G226600 [exp] 198 / 8e-55 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.010G078700 [exp] 194 / 3e-53 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10008586 pacid=23180109 polypeptide=Lus10008586 locus=Lus10008586.g ID=Lus10008586.BGIv1.0 annot-version=v1.0 ATGGACAAACCATTACCAGATCCATACAAACCAAATCTCACAATGTTCCCGCTTCTTCTTCTACTTCTCCTAACCGCCATCCCGCCATCCGCCGGCCAGC AAAGCTACGTCGCCAACCACCAGCTCGCCTGCTATAACCAGACCTTCAATTACACAACCCTAGGCTACCTCTGCAATGGCCCTCCCTCCTGCAAATCCTA CCTCACCTTACGATCCTCACCGCAGTACTCCTCCCCACTCTACATCGCCTACCTCCTCGGCCTCCCAACCGCCGCCGCCGCCGAGGTCACCTCCCTCAAC AACCTCTCCTCCGACATCGCCTCCATCCCTCCCAACACCCTCGTCGCCGTCCCTGTCAACTGCTCTTGCTCCGGATCCATCTCCGACCAACGGTACTATC AGCACAACGCCACCTACGCTCTCAAGACCCAAGGCGAAACCTACTTCTCCATCGCCAACAACACCTACCAAGGTCTCACCACTTGCCAATCCCTAATGTC GCAGAATCGTTTCAGCGATCGTCGTCTTTTCGTCAATATGACCCTCAACATCCCTCTCCGTTGCGGCTGTCCTACTGCTAATCAAACTGCCGCTAGGTAT CTTCTCACGTATATAGTCACTTGGGGAGATTCCGTCTCTGCGATTGCTGATCTCTTCGGAGTTGACCAGCAGTCAATCCTCGATGCTAATCAGCTCTCTC CACAAAGCATCATCTTCCCTTTTACTCCGATTTTGATTCCTTTGGAATCCGAACCGAATATGGCCGCTCTTATTAATCGTTCTCCTCCAGCTGCTCCGCC TCCCAACGGTAATCAAACCGTCATTTTCCCGGACGGCGGTGGTAATAATAACGGCAGCGGTGGCGGATCCAGTAAGAAATGGGTGTTTATCGGTGTTGGA ATTGGAATAGGAATTCTCCTCCTATTTTCAACCCTAGCCGCGGTGAGACTGTACCATCGTCGTCGGAAGCAGCCCCTACTGGTTTCTTCCTCCGCCGTGG AAGAAAAACCACCGTCCAAGAGAAAGGATAGTTCTACTACGAACTGGGAGTCGGAGTCTGGATACGTTTCTTCTTGGTCTTTATCCCAAGGGGTGAAGAA TGCAGTGGGGGCTTTGACTGTGTACAAGTTTCACGACATAGAGGTGGCTACAGATCACTTCAGCCAAGCTAACAAGATCAAAGGCTCAGTATACAAGGGG ATCTTCAAGGGAGATGCTGCTGCTGTGAAGGTGATGAAAGGAGATCTCTCAGCTTCACCTGAGATCAACATCCTGAAGAAGATTAGTCACTCCAGCGTCA TCCGTCTCTCTGGATTCTGCGTACACGACGGTAATACTTATCTTGTTTATGAGTATGCTGAGAATGGTTCTTTATCCGACTGGATCATTCTCGAATCTGC TAAGTCCACGAAGAGTGGAACGTTGCCTCTAACGTGGAAGCAAAGGGTTCAGATTGCTCATGATGTGGCTGATGCTCTTAACTATCTCCACAGCTACACT AACCCACCATACATTCACAAGAACTTGAAGGCTAGTAACATCCTCTTGGATGCCGGGTTTCGAGGTAAGGTCACGAATTTCGGGCTGGCGAGAATGGCTG TTGCCGAGGATGATGATGATGCATCCCATCTGACAAGGCATGTGGTTGGAACTCATGGCTATATGGCTCCTGAATACATAGAGAATGGACTCATTACGCC CAAGCTCGATGTTTTTGTATTCGGGGTCGTGTTACTGGAGCTTCTTTCGGGGAAAGAAGCCGCTGCTACTGCTTCAAGAGGTGAAGAACTTCTCTTTAGC TCGATAAACAGGGTTCTTGAAGGAGACAATGTCAGGGACAAGCTGCGTGCTTTTGTCGATCCTTTGTTAATGGAGGACGAATACCCGTTAGATCTTGCCT TCTCCCTGGCTCAGCTCGCTAAAGGGTGTGTTTCTCGAGACCTCAACGCTCGACCTGGCATGCCCCAGGCTTTGATGACTTTGTACAGGATACTGTCCTC TTCGCTGGACTGGGATCCTTCTGATGAGGTTCAGACATCCTCTGCCTCTAATTCTGCCAGTCAAGGGAGGTAG
AA sequence Show only first row Show all	>Lus10008586 pacid=23180109 polypeptide=Lus10008586 locus=Lus10008586.g ID=Lus10008586.BGIv1.0 annot-version=v1.0 MDKPLPDPYKPNLTMFPLLLLLLLTAIPPSAGQQSYVANHQLACYNQTFNYTTLGYLCNGPPSCKSYLTLRSSPQYSSPLYIAYLLGLPTAAAAEVTSLN NLSSDIASIPPNTLVAVPVNCSCSGSISDQRYYQHNATYALKTQGETYFSIANNTYQGLTTCQSLMSQNRFSDRRLFVNMTLNIPLRCGCPTANQTAARY LLTYIVTWGDSVSAIADLFGVDQQSILDANQLSPQSIIFPFTPILIPLESEPNMAALINRSPPAAPPPNGNQTVIFPDGGGNNNGSGGGSSKKWVFIGVG IGIGILLLFSTLAAVRLYHRRRKQPLLVSSSAVEEKPPSKRKDSSTTNWESESGYVSSWSLSQGVKNAVGALTVYKFHDIEVATDHFSQANKIKGSVYKG IFKGDAAAVKVMKGDLSASPEINILKKISHSSVIRLSGFCVHDGNTYLVYEYAENGSLSDWIILESAKSTKSGTLPLTWKQRVQIAHDVADALNYLHSYT NPPYIHKNLKASNILLDAGFRGKVTNFGLARMAVAEDDDDASHLTRHVVGTHGYMAPEYIENGLITPKLDVFVFGVVLLELLSGKEAAATASRGEELLFS SINRVLEGDNVRDKLRAFVDPLLMEDEYPLDLAFSLAQLAKGCVSRDLNARPGMPQALMTLYRILSSSLDWDPSDEVQTSSASNSASQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	0	1
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	2.0	0.9444
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	2.0	0.9092
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	3.9	0.9101
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	4.2	0.8985
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	4.5	0.8765
AT5G39865			Glutaredoxin family protein (....		Lus10017335 [exp]	5.0	0.9049
AT4G32020			unknown protein		Lus10001940 [exp]	7.3	0.8943
AT2G25250			unknown protein		Lus10041025 [exp]	8.4	0.8964
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	9.4	0.8944
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	9.7	0.9102

Compare expression of checked genes

Lus10008586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.