Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45260 257 / 3e-81 Plant protein of unknown function (DUF641) (.1) AT2G30380 220 / 6e-66 Plant protein of unknown function (DUF641) (.1) AT1G53380 184 / 6e-53 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 183 / 2e-52 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 176 / 5e-50 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT3G60680 167 / 2e-46 Plant protein of unknown function (DUF641) (.1) AT4G34080 133 / 7e-36 Plant protein of unknown function (DUF641) (.1) AT4G33320 133 / 2e-35 Plant protein of unknown function (DUF641) (.1) AT5G58960 134 / 2e-34 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G36100 56 / 7e-09 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024190 [exp] 596 / 0 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 572 / 0 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 258 / 1e-81 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 254 / 3e-80 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 184 / 2e-52 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 167 / 2e-46 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 166 / 3e-46 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 158 / 1e-43 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 159 / 6e-43 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155400 [exp] 476 / 2e-166 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 406 / 2e-139 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 270 / 4e-86 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 208 / 7e-62 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G108000 [exp] 206 / 3e-61 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145000 [exp] 197 / 9e-58 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 186 / 1e-53 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 169 / 2e-47 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.011G071000 [exp] 166 / 3e-46 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 157 / 3e-44 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10008587 pacid=23180057 polypeptide=Lus10008587 locus=Lus10008587.g ID=Lus10008587.BGIv1.0 annot-version=v1.0 ATGGAGTGTGCGCCAGCTAAACCCCTGAAGCCCTCTTCAAACATTACGGACTTGGTCTCCAAGTTTGCCAAAGTTTGCAGATTGAGATCCATTGGTGTGC TTTCCGGCGAAAACCCACTTAGCAGCCACATCACTTCAGCTGGCACTGTCAAGGGTCCATTGATGGGAGAGAGTAGCAGGTCCATTGATGCCACGGCTGG GAAGGAAAAAGTCCAACCTAAGATTGGGAAAGTGGGTGGTGGTGAGGACAAGGATTTGCTTAAGCTGTTTGATTCAGTTTCTGCTCTGAAATTGGCATAT ATCAAGCTCCAGGAAGCTCATGTCCCTTATAACCCTGAGAAGATCCTAGCTGCTGATGAAACTTTCATGTCTCAGCTCCAAACCCTATGTAACATTAGGC GGTCGGTTAAGGAGAAGCAGTTTGAGCAAATGAAGCTTGATTCTTCTCATTTGGAATCCTTACGGACTGAAGTTGAAGCTAAAGAGAGGATCTTGGAGAA GCTGAAGTCTCAAAGTGGGACTAAAGATGCCGAGATTGCTCGACTTAGAGAGGAGCTTCATGATTTGGATACTGGGAATTTGCTGTTGGTTGAGACTATC AGGACAAAAAGCTTGGAGAAGAAAAGGAGTTTGATGAGATCAGTTGAAGATACTGCCGCCTTTGAGGAAATATTCAGTAAGGCTTGTAAGTCGATTCACG ATTTCGCAAAGCCAATGATTAGTCTGATGAAAGCTTCAGGGTGGGATCTGGATCTGGCTGCGGATGCGATTGTAAATGGAGCGAATTATTCGAAAAGGTC GCATAAGAAGTATGCGTTTGAAGCGTTCATCTCGTGGAGAATGTTTCATGGGATGTCCTCACTCCAGTCATATAATGTGGATGATGTGATGAAGTATAAC GATGATGATGATCCTACTGCATATCTGATACAGAATCCCAATTCGGAGTTTGCGAAATTCTGCGCGAAAAAGTACTTGTTTGTTGTTCGTCCAGCGATGG AGATTGCTTTCTTTGGGAACTTGGATCATAGGATGTTGGTGATTAATGGGAAGCATCCAAGAACACCATTTTACCAAATCTTTGCCAAAATGGCAAAGTG GATATGGGTTCTCCAGGGAGTTGCCACATCCATTGATCCCCAAGCAAAGCTATTTACAGTAGGCAGAGGGAATGAATTCTCTGATATCTGTATGGAATCT GTTGATCAAGAAATCACAGAAGATGCAACAGTAAGGACACCGGAAGACTCGAAATGTAAAATTGAGTTCATGGTCATGCCCGGGTTCAGAATTGCGGACA GATTGGTTAAATCGCGGGTTTATGTTTCGAAACCAAAATGA
AA sequence Show only first row Show all	>Lus10008587 pacid=23180057 polypeptide=Lus10008587 locus=Lus10008587.g ID=Lus10008587.BGIv1.0 annot-version=v1.0 MECAPAKPLKPSSNITDLVSKFAKVCRLRSIGVLSGENPLSSHITSAGTVKGPLMGESSRSIDATAGKEKVQPKIGKVGGGEDKDLLKLFDSVSALKLAY IKLQEAHVPYNPEKILAADETFMSQLQTLCNIRRSVKEKQFEQMKLDSSHLESLRTEVEAKERILEKLKSQSGTKDAEIARLREELHDLDTGNLLLVETI RTKSLEKKRSLMRSVEDTAAFEEIFSKACKSIHDFAKPMISLMKASGWDLDLAADAIVNGANYSKRSHKKYAFEAFISWRMFHGMSSLQSYNVDDVMKYN DDDDPTAYLIQNPNSEFAKFCAKKYLFVVRPAMEIAFFGNLDHRMLVINGKHPRTPFYQIFAKMAKWIWVLQGVATSIDPQAKLFTVGRGNEFSDICMES VDQEITEDATVRTPEDSKCKIEFMVMPGFRIADRLVKSRVYVSKPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	0	1
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	1.7	0.9754
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	2.0	0.9566
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	2.4	0.9595
AT5G19340			unknown protein		Lus10041215 [exp]	4.2	0.9541
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	5.0	0.9550
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	5.3	0.9525
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	6.6	0.9479
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	7.9	0.9510
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	9.0	0.9575
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	11.0	0.9518

Compare expression of checked genes

Lus10008587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.