Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30395 98 / 2e-25 OFP ATOFP17, OFP17 ovate family protein 17 (.1) AT1G06923 83 / 5e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009922 [exp] 146 / 1e-44 AT2G30395 141 / 8e-43 ovate family protein 17 (.1) Lus10024191 [exp] 138 / 2e-41 AT2G30395 137 / 2e-41 ovate family protein 17 (.1) Lus10034910 [exp] 39 / 0.0008 AT3G16070 72 / 3e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155300 [exp] 149 / 1e-45 AT2G30395 121 / 1e-34 ovate family protein 17 (.1) Potri.019G128400 [exp] 140 / 4e-42 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008588 pacid=23180114 polypeptide=Lus10008588 locus=Lus10008588.g ID=Lus10008588.BGIv1.0 annot-version=v1.0 ATGAAAGCATTAGGTGCCTTGAGATCCAAGCTTCTCACTCCATGCAAGAAACTCGTCCTTAGGGTCACTTTCAAGCTCTGGAAGCCCCTTAGACTCCTCC GTTTTCGCCTCCGAGCCACCAAGTCTTCACTCACATCTCTTCCCACGAATCCAACCTTCGACCCTGTGTCCCCGTGCTTCCATTCTCGACACCAACGGAG GAGAAAGAAGATTAACAGGGTAATTGAGCTGAGGAGGAGTGTATCGTCCGAAGACGAGAAAAAGCTCTTCCCTTCGCCTGTAACCCCGTCTTACATCAAG GCCTTCAGGGCTGCCAGAACCGATAGCCGGTCTGGCAACCAAGATGCCAGCAGAAGCTTCGAGGACTATTTGGCTGAGATGATAGTTGAAGAAGGGAGGA TGAAGGACGACCTTACAGATCTAGAGGAGCTTGTTCATTGCTGGAAGAACCTCAAGTGCCCTGTCTTCATCGATGCGGTCTGCAGGTTCTACAATGAGCT TTGCAAGGACTTGTGTGCATCGACAGATCTAAGAGAGCCTCTCCCAAGTCACGGCCCAACCTATCTTCAAGCCTAG
AA sequence Show only first row Show all	>Lus10008588 pacid=23180114 polypeptide=Lus10008588 locus=Lus10008588.g ID=Lus10008588.BGIv1.0 annot-version=v1.0 MKALGALRSKLLTPCKKLVLRVTFKLWKPLRLLRFRLRATKSSLTSLPTNPTFDPVSPCFHSRHQRRRKKINRVIELRRSVSSEDEKKLFPSPVTPSYIK AFRAARTDSRSGNQDASRSFEDYLAEMIVEEGRMKDDLTDLEELVHCWKNLKCPVFIDAVCRFYNELCKDLCASTDLREPLPSHGPTYLQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10008588 [exp]	0	1
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	4.8	0.7874
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	8.1	0.7558
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	10.2	0.7496
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	12.5	0.7380
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	13.9	0.7655
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	14.1	0.7306
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	16.1	0.7484
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	16.1	0.7366
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	18.0	0.7209
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	21.0	0.7276

Compare expression of checked genes

Lus10008588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.