Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58350 559 / 0 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 542 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT3G22420 432 / 4e-146 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G48260 425 / 6e-144 WNK3 with no lysine (K) kinase 3 (.1) AT3G04910 393 / 4e-129 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 377 / 7e-126 WNK9 Protein kinase superfamily protein (.1.2) AT1G49160 376 / 3e-124 WNK7 Protein kinase superfamily protein (.1.2) AT3G18750 371 / 3e-122 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT5G41990 339 / 6e-110 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 338 / 7e-110 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042223 [exp] 969 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 692 / 0 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 683 / 0 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 512 / 8e-177 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10022747 [exp] 513 / 9e-177 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10010547 [exp] 441 / 3e-148 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 434 / 2e-145 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10041947 [exp] 413 / 3e-138 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 407 / 3e-131 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155100 [exp] 638 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 601 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 550 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.013G036300 [exp] 441 / 2e-147 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 437 / 5e-146 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 431 / 2e-143 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 416 / 2e-139 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 410 / 4e-137 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.008G152300 [exp] 387 / 1e-126 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G057300 [exp] 371 / 5e-121 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008590 pacid=23180075 polypeptide=Lus10008590 locus=Lus10008590.g ID=Lus10008590.BGIv1.0 annot-version=v1.0 ATGAACAGAAACGAGCTCAACTCTCAGGTTCCTGCCGCTGATCATGGTTATGTGGAGACTGATCCTACTGGCCGGTATGGACGGTTCAATGAAGTTCTCG GTAAAGGAGCGATGAAGAAAGTATACAAGGCTATTGACGAATACCTTGGGCTGGAAGTAGCATGGAACCAGGTCAAACTCAACGAGTTGCTTCGCAGACC GGACGATTTGCAGAGGCTGTACTCTGAGGTCCATCTCCTCAGCACGCTGAACCACCCTTCCATCATCCGGTTCTACACGTCTTGGATAGATACTCACAAG AAGACTTTCAACTTCATCACCGAAATGTTTACATCTGGGACTCTCAGAGAGTACCGTAGGAAATACCATCGAGTGAGCATTCGAGCTATAAAGAGGTGGG CTCGGGAAATCTTACAAGGGCTTGTCTACCTACATGGCCATGATCCTCCAATAATACATAGAGACCTGAAATGTGACAACATCTTTGTCAATGGTCATCT TGGACAAGTCAAGATCGGTGATTTGGGTCTCGCAGCAGTTCTTCGGGACTCCCAGTCAGCCCACAGTGTAATAGGCACCCCTGAGTACATGGCTCCGGAG TTATATGAGGAAGATTACAACGAGCTGGTTGATGTGTACTCATTTGGCATGTGTGTTATGGAGATGTTCACAGCTGAATACCCTTACAGTGAATGCACTA ATCCAGCACAAATATACAAGAAAGTTACCTCAGGAAAGCTACCAGCAGCATACTATCGTCTTGATGACTTGGAAGCGCAGCGATTCATTGGTAAATGCTT AGTTGCTGCTTCAAACAGGGTATCAGCAAAAGATCTGCTGTTAGATCCTTTTCTTGCACCAGATCCTGTCAAAGGGGTTAGAAATCCGACACCTTTCTTG AACCACAAGGAAATGGAGAAACTGCAAGTGGATGATGATGATCCACCTAGGACAGATATGACAATCACTGGGAAACTGAACCCTGAAGATGATACCATCT TTCTTAAAGTTAAGATCGTCAACAAAGACGGTATAATGCTTCCCTTTCCTCGTGCCTATCGTTCTCTTAGGAATGTGTTTTTCCCGTTTGATATTTTGCA TGATACTCCAATGAACGTTGCTGTGGAGATGGTAAAAGAGCTGGAGATTGATGATTGGGAACCGCCCGAAATTGCTGGAATGATTGATCAGGCGATTTCA GCTCTGGTGCCTGATTATGAAACCAACCATAAACCTAACTGTCCGGAGTATGATGAAAATGTCCATCCTTCCGGTTCTCCCTCCTCGAGTTCCTCGTCCC ATGCATCTTTCACAGGGATAACCGTCTGGCCACAAGGGAATACAAACTCTGAAGGGCAAGGACTTGCAAGAATCGCCTACCAAAACTGCATGGCTTTGCT CGAGTCACAACACAGCGGTCATGGGTCTAGGAACAGATTAAGGGACGTGGACCTTCGTAGACTGACAAGGAACTGGTCACTAGTCGACGTTCACAGCCAG TTACTACACCAGTCATTAGTGGAGGAGGTGAACAAGAGGCGACTTTTCAACACTGTTGGAGCTGTGGAGAACATTGGGTTTCAGGCACCTCCCGCTGTTT CTGAAAGGCGGTCCCAACATATGTCAAGGAGAAACTGGAAATAA
AA sequence Show only first row Show all	>Lus10008590 pacid=23180075 polypeptide=Lus10008590 locus=Lus10008590.g ID=Lus10008590.BGIv1.0 annot-version=v1.0 MNRNELNSQVPAADHGYVETDPTGRYGRFNEVLGKGAMKKVYKAIDEYLGLEVAWNQVKLNELLRRPDDLQRLYSEVHLLSTLNHPSIIRFYTSWIDTHK KTFNFITEMFTSGTLREYRRKYHRVSIRAIKRWAREILQGLVYLHGHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAVLRDSQSAHSVIGTPEYMAPE LYEEDYNELVDVYSFGMCVMEMFTAEYPYSECTNPAQIYKKVTSGKLPAAYYRLDDLEAQRFIGKCLVAASNRVSAKDLLLDPFLAPDPVKGVRNPTPFL NHKEMEKLQVDDDDPPRTDMTITGKLNPEDDTIFLKVKIVNKDGIMLPFPRAYRSLRNVFFPFDILHDTPMNVAVEMVKELEIDDWEPPEIAGMIDQAIS ALVPDYETNHKPNCPEYDENVHPSGSPSSSSSSHASFTGITVWPQGNTNSEGQGLARIAYQNCMALLESQHSGHGSRNRLRDVDLRRLTRNWSLVDVHSQ LLHQSLVEEVNKRRLFNTVGAVENIGFQAPPAVSERRSQHMSRRNWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10008590 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10042223 [exp]	1.4	0.9312
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	2.0	0.8988
AT3G47510			unknown protein		Lus10019094 [exp]	10.6	0.8441
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	15.4	0.8913
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10033880 [exp]	16.8	0.7979
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	19.5	0.8391
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10017164 [exp]	19.7	0.7827
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	20.2	0.8392
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	20.7	0.8733
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10017188 [exp]	22.8	0.8266

Compare expression of checked genes

Lus10008590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.