Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47860 486 / 2e-171 Protein of unknown function (DUF1350) (.1) AT3G43540 92 / 3e-20 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042222 [exp] 743 / 0 AT5G47860 548 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10009920 [exp] 597 / 0 AT5G47860 612 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10024193 [exp] 545 / 0 AT5G47860 566 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10019508 [exp] 107 / 6e-25 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 100 / 2e-22 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158400 [exp] 528 / 0 AT5G47860 605 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.001G072400 [exp] 526 / 0 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.006G217700 [exp] 105 / 8e-25 AT3G43540 494 / 4e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07082 [flax] [poplar] DUF1350 Protein of unknown function (DUF1350)
Representative CDS sequence Show only first row Show all	>Lus10008591 pacid=23180104 polypeptide=Lus10008591 locus=Lus10008591.g ID=Lus10008591.BGIv1.0 annot-version=v1.0 ATGGTGGTTTGCTTGCAGTTCCAGAGCAATCAGCTACTGGTTCAGTCTCCCCATGGTAAATTCACTGCTCTCTCCGATCACCCTCCTGCTCCTAATCGTC TACAATTACGTCATACAACCACCACCAACGGAATTCGTTGCCAGTACGATGATATCAGCTGGAAACCAGAGCAAACCTCTTCTTCTGGAATTCAACTCTA TGGTCAGATTGAGAGGGTACTTACTGAGACTGTGAGACAATCTCAGGATGCTTGGGGCTCTTTGGCTGACTGGACTGAGATTGAGGGAGCATGGGTTCTT AAACCAAAGAATCGAAGGCCTAACTCGGTTGTCCATTTCGTCGGTGGCATATTCGTCGGGGCAGCACCACAACTGGCCTACCGTTTGTTCCTCGAGCACC TTGCAGAGAGGGGTGTACTGGTTATCGCGACACCATATGCTAGCGGGTTCGACTATTTCCAGATTGCAGATGAAGTTCAGTTTAAATTCGATAGGGCTTT TCGCTTCTTACAAGATCCTGTGCAAGATCTTCCTTCCTTTGGTATTGGTCATTCTTTGGGGTCTGTTATTCACCTTCTGATTGAAAGTGAACTTGCTGCT GTCCAGGATCGCGTTATGCTGTCCAAAGAAGTGAAGTTGCCGCAGGCCGAAATTACGTTGAAGCAGATAGAGAGCATCGCCCCTCCTTTCATGAGACAAG CTTTCCCTCTAATAGAGCAGCTTCCTCCTTTGTACATGGACCTGGTCAACGGCAGAGAAGACTTCAGTCCTAAACCCGAAGAGACTCGTCGCCTTATAAA ATCATATTATGGGGTCTCCAGAAACCTTCTAGTAAAGTTCAAGGCCGATTCCATCGATGAGACCTTTTCGTTAGCGCAAATCCTTAGCTCGGAATCAGCT GTTAGCTCCATGATCGACCTGTCAATCCGATCATTACCAGGAGATCATGGTCTTCCCTTGCAACAGGCCCTCCCGGATGTTCCACCGGCAATGGCGGATG CAGTAAACCGAGGAAGCGAGCTGTTCACAAATCTGGCGGTTGGGACTCCATGGGAGACTGTCGCGAAAGAAGTAGGGTACTCTTTGGGGAGTGACAACCG GATCGTTCGCGCACAAGCCTCCAAGGACCTGGCTAAGCTTGTGGATGTGATCATGTCCTGGATGGCTTCGAATGCAGGTCCGAAGATTTTAAGTCCGAGA TGA
AA sequence Show only first row Show all	>Lus10008591 pacid=23180104 polypeptide=Lus10008591 locus=Lus10008591.g ID=Lus10008591.BGIv1.0 annot-version=v1.0 MVVCLQFQSNQLLVQSPHGKFTALSDHPPAPNRLQLRHTTTTNGIRCQYDDISWKPEQTSSSGIQLYGQIERVLTETVRQSQDAWGSLADWTEIEGAWVL KPKNRRPNSVVHFVGGIFVGAAPQLAYRLFLEHLAERGVLVIATPYASGFDYFQIADEVQFKFDRAFRFLQDPVQDLPSFGIGHSLGSVIHLLIESELAA VQDRVMLSKEVKLPQAEITLKQIESIAPPFMRQAFPLIEQLPPLYMDLVNGREDFSPKPEETRRLIKSYYGVSRNLLVKFKADSIDETFSLAQILSSESA VSSMIDLSIRSLPGDHGLPLQQALPDVPPAMADAVNRGSELFTNLAVGTPWETVAKEVGYSLGSDNRIVRAQASKDLAKLVDVIMSWMASNAGPKILSPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	0	1
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	1.0	0.9548
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	1.4	0.9473
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	2.8	0.9145
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	3.9	0.9079
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	6.0	0.9146
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	7.1	0.8654
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	8.3	0.8569
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	9.0	0.8941
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	11.2	0.8855
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	11.2	0.9067

Compare expression of checked genes

Lus10008591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.