Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 308 / 3e-94 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 281 / 5e-86 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G61690 275 / 8e-80 nucleotidyltransferases (.1) AT2G40520 233 / 3e-69 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042221 [exp] 1000 / 0 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 311 / 2e-96 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 304 / 1e-92 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 302 / 6e-92 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 278 / 1e-85 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 280 / 2e-81 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 279 / 9e-81 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 265 / 1e-77 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10030537 [exp] 248 / 2e-73 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154900 [exp] 380 / 1e-121 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 373 / 5e-119 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 290 / 8e-89 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.015G020400 [exp] 293 / 8e-86 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 286 / 1e-83 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 278 / 2e-80 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 276 / 7e-80 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 64 / 5e-12 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008592 pacid=23180119 polypeptide=Lus10008592 locus=Lus10008592.g ID=Lus10008592.BGIv1.0 annot-version=v1.0 ATGTTAATGGGCGATCTTGAAGTCTGCTCAAACGGCGGGAAATTCTTGAGGAGGAGGCCAGACGGCCACTGTTTCGAAGACGTGCAGTTACCCTCTACCA TGGTGGTTGGTTCGAGGAGCCATGGGAATCCGGATCCTGAATCCATTGCGTTAGAGAATTGGGAGAGAGCCGAAGACGTTGCTCGCGAGATTGTCTTGAA ATCCACCCTACGGTTGAAGCTGATCGTAAGAGACACTGCATCATTCGGTATCTCCAGCTGCTCATCAAGACTTCCCTTGGACTTGAGTAAGATCAAGAAC GAGTTTTTTCCAGAAATTTGTGATCAAATTTGGCTCAAGAAGCTCAAGTCATCTAACCCTGAAAGAGTTTTGTTCACATACGGATCGGTTCCATTGAAGA CCTATCTACCAGATGGAGATATTGATTTGACTGCATTTAGCTATCCAACTGCAGAGGACGTGTTGGTTGCTGATGTCTACTCCATCTTGAAAGGGGAAGA GCGCAACAGCAGTCCTAGATATAAAGTGAGGAATGTCCACAAGATAGATGCCGAGGTTAAGCTTATAAAGTGCGATGTGGAAAATATTGTGGTGGACATA TCATTTAATCAGTTGGGAGGACTTTGCACCCTATCCTTTCTTGAACAGGTTGATAGGCTTGTGGGCAAAAATCACCTATTTAAGAGAAGCATTCTTCTGA TCAAGGCTTGGTGCTACTACGAGAGCCGAATTCTAGGGGCTCATCACGGTTTAATAGCGACTTATGCCTTGGAGACTCTTGTTCTCTACCTCTTCCATCA CTTCCACTCTTCGTTAAATAGCCCTCTGGCGGTTCTTTACAGATTTTTGGATTACTTCAGCACGTTTGACTGGGAGAACTACTGTATTAGCTTACACGGA CCAGTTTGCAAATCTTCCCTGTCCAAGTTTGCTGGTAAGATAAGTACTTGTGTTTTTTTCGGCAATAGATGGCCTGACAGCTACATCGGTGACAAGGGTT CTTCTTGCTTTATGCAGCGAAGCCACCTGAATGCAGGACGAGAGGGTAATTTCTATCGAATATGCAGTGCTTTTAAGCACGGATCCCGCAAACTCGGATG TATCCTTCTGCTACCTGTAGAAAACATTGATAATGAGCTGAAGAAGTTATTCGCAAATTCGTTGGACAGACAATCCGGAGCTTATTGGTCTGATGGTCGA AGTCAATGTTCTTTCTCCATGTTGGATCTAAGTGGAGACTATGGATGCCACTTTAGGAGCGTCTTATATGGACAGTTTTGCCACTTGTGTAGTGCATCTG CAGCTGAAATGTACAATCCTACCTTGTTGCCCGAGCCAAATCGACTTTCTCACATAAACCTTGATGATATTCCGGATTTGGAGCAATGCAGGGTTAGTCA TTTTACAAAGGCTGCTGTTGTTCCCGGCTGTGATGAGAAGGAAATACGGAGAGGAACTGGAACATACATTCCCAAATTGCTGGTCAGTGATGAGCATAAT CTGTGCGAAGTAAGGAATCAGGTCAACCTTGGATCTAATGTTCAATTGGAGGGGAATGGTCCCTTTTGCAGTGTACAGCCAATTATGCAGGAGATAACTC CCCGTGAAGGCCGCCATGTTCTCTCGGAGGTGGAATATCCACATCTTAATGGCGTGAAATCAAAATTATCTCACGCTCGAGAGTCTAATCCTTTTCCACC GGGATGTTCGAATGCCAACGTCTTCTCTTGGCTAGCGGCAATAACAGATTCTGGATCACAGGCCTCGAATTCTCTAGAATCGACCTCGCCAGATGGGACT GCTGCAACAGACTTGGTGGTGTCAACAGATTGGGAATGTGTTTCGAGCCCCGGGGTTAGCGTGGAAGAAAGTTGCGAGCCATTTCCAGACAGCACGGTTG AAAGGTAA
AA sequence Show only first row Show all	>Lus10008592 pacid=23180119 polypeptide=Lus10008592 locus=Lus10008592.g ID=Lus10008592.BGIv1.0 annot-version=v1.0 MLMGDLEVCSNGGKFLRRRPDGHCFEDVQLPSTMVVGSRSHGNPDPESIALENWERAEDVAREIVLKSTLRLKLIVRDTASFGISSCSSRLPLDLSKIKN EFFPEICDQIWLKKLKSSNPERVLFTYGSVPLKTYLPDGDIDLTAFSYPTAEDVLVADVYSILKGEERNSSPRYKVRNVHKIDAEVKLIKCDVENIVVDI SFNQLGGLCTLSFLEQVDRLVGKNHLFKRSILLIKAWCYYESRILGAHHGLIATYALETLVLYLFHHFHSSLNSPLAVLYRFLDYFSTFDWENYCISLHG PVCKSSLSKFAGKISTCVFFGNRWPDSYIGDKGSSCFMQRSHLNAGREGNFYRICSAFKHGSRKLGCILLLPVENIDNELKKLFANSLDRQSGAYWSDGR SQCSFSMLDLSGDYGCHFRSVLYGQFCHLCSASAAEMYNPTLLPEPNRLSHINLDDIPDLEQCRVSHFTKAAVVPGCDEKEIRRGTGTYIPKLLVSDEHN LCEVRNQVNLGSNVQLEGNGPFCSVQPIMQEITPREGRHVLSEVEYPHLNGVKSKLSHARESNPFPPGCSNANVFSWLAAITDSGSQASNSLESTSPDGT AATDLVVSTDWECVSSPGVSVEESCEPFPDSTVER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10008592 [exp]	0	1
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	15.1	0.6752
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	21.9	0.6331
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	34.0	0.5429

Compare expression of checked genes

Lus10008592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.