Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49400 733 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042218 [exp] 1638 / 0 AT3G49400 769 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024967 [exp] 50 / 9e-06 AT2G20330 871 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022855 [exp] 49 / 1e-05 AT2G20330 885 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021900 [exp] 898 / 0 AT3G49400 824 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10008595 pacid=23180068 polypeptide=Lus10008595 locus=Lus10008595.g ID=Lus10008595.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCAGATTCCAGGCCGCTTCCTTGGTCGGCGTCCCTTCTTACCCCAACGCCATTGCGTGGTCCGACGACAACTTCATCGCCGTCGCTTCCG GCCACATTGTCTCCATTCTCAACCCAGCATTGCCTTGCGGACCTCGCGGCACCATCACGGTTCCTACTGGCAAACATTACCCAATTGGCAGAGTTGAAAA AGCAGATTTGCTCTCGGGAGACTTGCTGCCTGCTGCATTATCACGGGACCGAAGACCATGTGTTAGGTCAATTGCTTGGTCTCCTCTTGGAATGTCTCCT AACTATGGGTGTTTGCTTGCAGTCTGTACCGTTGAAGGATTTGTGAAGGTTTATCGTCCACCTTTTTCGGATTTCTCCTCAAACTGGATAGAGGTCATAG ATATATCAGATATGCTGTATGATCATCTTGCAAAGAATAACTTTGCGGAGATCGACATATCTACTCCAGAGATTCCCACTCAGAATGGAAGATCAAAGGA AGGCCCTATTAACTGTCTCGAAATTACACGAGTGAGCGGTTACCCAAACTCCATTATAACCAAGCAGTACAAGCGCAGAAAAGTTATTGCTGCTACAGAA TTGAACATCAATGCTGATAGTTTTGGGGGACGATCATCTGAACCTAGACATCCAGAGATTACTAATACTGGGTCCACCCGTCACAATATCCTGGGCTGCA AGAAGTTACCAACGACAAGGCTTGGAAAGCTTGGGAAAAGTGTCTTGGGAAGCTGTAAATCCCAACTTTTGACATCAAAGGAGTATGCCACACGTAGTGC TCAAATTACCTCGCTTGTTCTTGCGTGGTCTCCGTTATTGGACACAAGCTTAGTTTCTTCACATGATCTATCCAAGAGATACTCCATCCTTGCTGTTGGA GGGAAGTCTGGTAAAATCTCACTCTGGAGAGTTCAGGCACCTCAATGCTATTCAGTTGAGCGCAGTAACTCCCCTCCTGGCGTGACACTTCTCGGTGTTG TTAACGCCCATACCTCATGGATCACTGCAGTGAGTTTGGAGTTAATCGTTTCTAACTCTAAGCCCCGGGTTGTAATGGTTACTGGAAGTACCGATGGAAG TGTAAAGATTTGGCTGGGGAATGTGGAGCAATTGCTTAAGTTGTCGAAAGCCAATAAAGTTCCCTTTGCTCTTGTAGACGAGGTACTACGTGTAAACTTT GTCCCGATTTCAGCTCTTTCGATCCTAGTGCCTGCTCAACCTGTACATAAAATGCTCATAGCAGTTGGCAAAGGATCCGGATCCTTTGAAATTTGGACAT GTGACACATCCGGCTTCAAATTCGAGAAAGCTGGCTGCCATGATGCTCATGGCTATGCCGTTACTGGTTTATGTTGGTCTTCAGATGGATGTTCTTTATA CAGTTGTAGCCAGGATAATTATGTACGCAGCTGGGTCTTACGTGGGAAATCCTTCTCCGAAGTTCCCATTCGTTCGAACCTTCCTGGTCAAACAGGTTCA GATGATATTCCTGATGCTTTGCTGTCATGCCTGGGTGTGGCTTCATCTCCTGGAAATCTCATGGTTGCAATGGTCCGTGACTTTGATGTCGAGCTATTGG AACATATGTACGAGGCAAGGGCTCAGAAGGCCGTAGTTGAGTTCTTTTGGATCGGTGGACAATCTTCGGAGAGCACACCAAGCAGTTCAACAGAGTTCTA CCAAGAGACATTTCCTGAATTCCCGCCAAATGAATTGGCTGCTTGGGAGTTCAACACCCTATGGTCTTTGAAACAGTATGAAGATCCAAACAAGCCTTTG GTTGTTTGGGACATCACAACAGCACTGCTGGGTTTCAAAGATCCCATCCCAAAGTATCTCGACTATTTACTCGTCAAATGGCTATCTACAACATTCTTGG GTGGTCAGTACATCAATCGTCCCCTTTCTGAGATCACGAAACGAGTCCTGGAAAGCTTGTCGAAAGCCTCTACCCGCCAGCTGCACCTTCTGAACATCAT TAACAGACGAGTCATCTTGTCTAAGCTGAAGGCTGAGGAAATCAACAACTCCAATGCTTCCGATGACGAGACAATACAGTTCGTTCAGACGTTACTCAGC AGTGAAAGAGAGCTCCGACAGAGACTCGTAGGACTCAGCTTCGCTGCCAATTCAGCTACAACTTCCTCATCGCAAAAACCTGAATCCTGGTCCCCATTTG GTGTCATGCACATGCAGCAATGGGTTACACTTAACCATGCAAACGTGAAAGATCAACTTAAAGTCCTTGCATCACAAGTTCAAAAGCATACAAGAAAAGC AACGGAGAAGTGCACGTTCTGCACGGCCTCGGTTCCTTTCGAATCTCCAGAATCCGCAACCTGCATTGGTTCGGAGATCGTTGGAGGAGATCTCCAGAGA CATGAAGTGCCAAGATGTGCAGTGTCAATGCAGGTTTGCCCTGCTACACCTCTATGGTTCTGCAAGTGTTGTCATAGGAAAGTGCACAAGTTGGCTCCAG ATTATCTATTCAAGATGCCTAGGTTTCCCATGGATTTCACTTCATGGAGAGAAGAAGAAGCTTCTCCAGATCAAAGATCCTCAAGACCCTTCTGTCCATT TTGTGGGGTTTTGATGCAGAGATTGCTGCCTGATTTTCTACTGTCCTCGCAGCCGGTATGA
AA sequence Show only first row Show all	>Lus10008595 pacid=23180068 polypeptide=Lus10008595 locus=Lus10008595.g ID=Lus10008595.BGIv1.0 annot-version=v1.0 MAASRFQAASLVGVPSYPNAIAWSDDNFIAVASGHIVSILNPALPCGPRGTITVPTGKHYPIGRVEKADLLSGDLLPAALSRDRRPCVRSIAWSPLGMSP NYGCLLAVCTVEGFVKVYRPPFSDFSSNWIEVIDISDMLYDHLAKNNFAEIDISTPEIPTQNGRSKEGPINCLEITRVSGYPNSIITKQYKRRKVIAATE LNINADSFGGRSSEPRHPEITNTGSTRHNILGCKKLPTTRLGKLGKSVLGSCKSQLLTSKEYATRSAQITSLVLAWSPLLDTSLVSSHDLSKRYSILAVG GKSGKISLWRVQAPQCYSVERSNSPPGVTLLGVVNAHTSWITAVSLELIVSNSKPRVVMVTGSTDGSVKIWLGNVEQLLKLSKANKVPFALVDEVLRVNF VPISALSILVPAQPVHKMLIAVGKGSGSFEIWTCDTSGFKFEKAGCHDAHGYAVTGLCWSSDGCSLYSCSQDNYVRSWVLRGKSFSEVPIRSNLPGQTGS DDIPDALLSCLGVASSPGNLMVAMVRDFDVELLEHMYEARAQKAVVEFFWIGGQSSESTPSSSTEFYQETFPEFPPNELAAWEFNTLWSLKQYEDPNKPL VVWDITTALLGFKDPIPKYLDYLLVKWLSTTFLGGQYINRPLSEITKRVLESLSKASTRQLHLLNIINRRVILSKLKAEEINNSNASDDETIQFVQTLLS SERELRQRLVGLSFAANSATTSSSQKPESWSPFGVMHMQQWVTLNHANVKDQLKVLASQVQKHTRKATEKCTFCTASVPFESPESATCIGSEIVGGDLQR HEVPRCAVSMQVCPATPLWFCKCCHRKVHKLAPDYLFKMPRFPMDFTSWREEEASPDQRSSRPFCPFCGVLMQRLLPDFLLSSQPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	0	1
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	2.4	0.9086
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	3.2	0.9318
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	4.5	0.9104
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	4.5	0.9147
AT3G48200			unknown protein		Lus10035212 [exp]	6.9	0.9132
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	8.7	0.8448
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	9.2	0.9110
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	10.6	0.9015
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	10.8	0.8292
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	11.0	0.8913

Compare expression of checked genes

Lus10008595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.