Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 730 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 728 / 0 RLK receptor lectin kinase (.1) AT4G02420 682 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 664 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 637 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 614 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 585 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 572 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 567 / 0 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT3G45430 565 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 1072 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 1061 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 1032 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10016506 [exp] 640 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 637 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 633 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 624 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 623 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 617 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088680 [exp] 860 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 857 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 832 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 823 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 819 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 758 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 702 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 646 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 644 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 639 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10008597 pacid=23180077 polypeptide=Lus10008597 locus=Lus10008597.g ID=Lus10008597.BGIv1.0 annot-version=v1.0 ATGGTTATATTCCCGAAACTCGCCGTCGTCCTACTAATAACAACATCCTCCTTCTTACTCACTTCACTATCATCCTCCACCGACGTCAGTTTCACATACA ACCGCTTCCCGGCGGCGAACCTCGTACTCGACGGCATAGCAGAGTACACTTCAGACAACCTTCTCAGGCTCACCAACGACACAGTGCAGCGACAAGGCCA CGCCTTTTATCCAGACCCGGTACCGTTCAAGAACAACGATCCAAACGGTACCGTTTCATCCTTCTCCACTTCCTTCGTGGTCGCGATTGTACCTCAGTAC CCGAACCTCGGAGGCCATGGGATCGCCTTCGTGATCTGCCCCGCCAGAGGCCTCCCCGGTTCGAATCCTAGCCAGTACCTCGGCCTGTTCAACAAGTCCA ACAGTGGGAATGCTACCAACCATGTATTCGCGGTAGAGCTCGACACCATTTTGAGCAGCGAGTTTGGGGACATTGATAATAATCATGTCGGGATCGATAT CAATGGGCTGGATTCCAGGTCAGCGGCTTCAGCTGGGTACTATGATGATTCTGATGGCAGGTTTCTGAATTTGACTCTTATTTCTGGTCACCCGATTCGA GTGTGGGTTGACTACGACGGCAGAGGGAAGAGAATTAACGTCACTTTAGCTCCCGTTAATTATAACGGAAAACCAAAGAATCCATTAATTTCATTCCTGC AAGACCTGTCAGGAATTTTGCAGGAGAAGATGTTTATCGGCTTCTCGTCGTCCACAGGGTCGGTCCTGACGCGTCATTATGTATTGGGTTGGAGCTTTAA GATGAACGGTCAGGCTGAAGGTTTAACCATTTCTCCACTTCCCAAGCTTCCGGGGTTCAGAGACCCAAATGAAAGGTTGAAAATTGTGGTGCTTGGGAGA CCTGTGATTATGGTTGGGATTCCTGTGCTTGTTGTCGCTCTGGTTCTGATGGTGACTTTGGGAATTGTTTATTCCGTCAAGAGGCGGAGGAAATTTGCGG AAGTGTTGGAAGATTGGGAGGTTGATTACGGGCCTCACAGATTCAAATTCAAGGACTTGTATGTCGCCACGAAAGGGTTTCGGCCAAAGGAAGAATTGGG GAGAGGCGGATTTGGGACCGTTTACAAGGGAGTTTTGCGAAAAACGAAAAATGAGATAGCTGTGAAGAGGGTGTCTCATGATTCTAGGCAAGGGATGAAG GAATTCGTGGCGGAGATAGCTAGCATTGGCCGGCTTCGTCACCGGAACTTAGTGAGTCTGTTAGGTTATTGTCGGAGAAAAGGGGAGTTACTGTTGGTAT ACGATTTCATGCCGAATAGTAGTTTGGACAAGTATATTTACGATCAAGATAGATTAGTTATGAATTGGTGTCTAAGGTTCAAAGTTATTAAGGGTGTGGC TTCAGGGTTGTTCTACCTGCATGAGCAATGGGAACAAGTCGTCATTCATAGAGATGTGAAAGCAAGCAATGTTATGATAGATAGTGAATGGAACGGAAGA TTGGGTGATTTCGGCCTAGCAAGGTTGTATGATCGTGGGTCGGATCCTCAAACTACACATGTCGCTGGCACTCCGGGGTATCTTGCACCTGAACATGCCC GAACCGGGAAGGCCACGAAGAGTAGCGATGCTTATGCTTTTGGGGCATTTTTGCTAGAGGTGGCATGCGGGAGGAGGCCAATCGATCCGGAGAAGCCTGC CAATCAGGTGATTTTGGTGGATTGGGTGTTTTCCTGTTGGCTTAGTGGTGACATTTTAGAAGCTATGGATCCAAATTTCGGTGAAGAGTTTGTGGCTGAG GAAGTGGAGTTGATTTTGAAACTTGGGTTGTTGTGCTCTCATTCGGAGCCTAAAGCTCGACCGAGTATGCGACAGGTTCATCAGATGTTGGACGGCGAAC TACCTTTGCCTGATTTGTCGTCTATGGGACTTTTCATTTCCCCAATCGGCCTTAACTTTGCTTGTCGTGAGAGTCTCAAGGGATCAGCTTCGTCTCCACG TTCTTTTTCGCAGTCATTCAATCACCTGTCTTCTGCAGAAGGATCACTTGTATGCGGTGGTCGTTAA
AA sequence Show only first row Show all	>Lus10008597 pacid=23180077 polypeptide=Lus10008597 locus=Lus10008597.g ID=Lus10008597.BGIv1.0 annot-version=v1.0 MVIFPKLAVVLLITTSSFLLTSLSSSTDVSFTYNRFPAANLVLDGIAEYTSDNLLRLTNDTVQRQGHAFYPDPVPFKNNDPNGTVSSFSTSFVVAIVPQY PNLGGHGIAFVICPARGLPGSNPSQYLGLFNKSNSGNATNHVFAVELDTILSSEFGDIDNNHVGIDINGLDSRSAASAGYYDDSDGRFLNLTLISGHPIR VWVDYDGRGKRINVTLAPVNYNGKPKNPLISFLQDLSGILQEKMFIGFSSSTGSVLTRHYVLGWSFKMNGQAEGLTISPLPKLPGFRDPNERLKIVVLGR PVIMVGIPVLVVALVLMVTLGIVYSVKRRRKFAEVLEDWEVDYGPHRFKFKDLYVATKGFRPKEELGRGGFGTVYKGVLRKTKNEIAVKRVSHDSRQGMK EFVAEIASIGRLRHRNLVSLLGYCRRKGELLLVYDFMPNSSLDKYIYDQDRLVMNWCLRFKVIKGVASGLFYLHEQWEQVVIHRDVKASNVMIDSEWNGR LGDFGLARLYDRGSDPQTTHVAGTPGYLAPEHARTGKATKSSDAYAFGAFLLEVACGRRPIDPEKPANQVILVDWVFSCWLSGDILEAMDPNFGEEFVAE EVELILKLGLLCSHSEPKARPSMRQVHQMLDGELPLPDLSSMGLFISPIGLNFACRESLKGSASSPRSFSQSFNHLSSAEGSLVCGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	1.7	0.8554
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	5.1	0.8523
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	6.7	0.8400
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	14.5	0.7997
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	15.2	0.7940
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	15.6	0.8035
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	19.1	0.7638
AT2G36430			Plant protein of unknown funct...		Lus10027719 [exp]	20.0	0.7992
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	21.6	0.7844
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	22.9	0.7960

Compare expression of checked genes

Lus10008597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.