Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55190 48 / 6e-07 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 42 / 5e-05 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT3G13720 41 / 0.0002 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT5G56230 39 / 0.0005 PRA1.G2 prenylated RAB acceptor 1.G2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008598 [exp] 274 / 7e-95 AT1G55190 44 / 9e-06 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10042216 [exp] 259 / 3e-89 AT1G04260 43 / 2e-05 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) Lus10000019 [exp] 162 / 3e-52 ND / Lus10014747 [exp] 57 / 3e-10 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10033859 [exp] 57 / 3e-10 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10034363 [exp] 51 / 6e-08 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 50 / 1e-07 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10021996 [exp] 49 / 4e-07 AT1G08770 162 / 3e-50 prenylated RAB acceptor 1.E (.1) Lus10015631 [exp] 46 / 4e-06 AT1G55190 193 / 7e-63 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027900 [exp] 191 / 2e-62 ND / Potri.005G054700 [exp] 65 / 4e-13 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.005G219100 [exp] 61 / 1e-11 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 55 / 1e-09 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 53 / 8e-09 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10008600 pacid=23180101 polypeptide=Lus10008600 locus=Lus10008600.g ID=Lus10008600.BGIv1.0 annot-version=v1.0 ATGGCAGGCTATGGAACTATCCAACAGAGGGCACACAGCACTACCTCCTCTGGGAGTGACTCGCAACGTGATGCTGCCAATCTCAAAAGACCAGAATTTC ATCTCGTTTGCCCCTTGAGCATCCCTTCCTCCCCAGAAGCAGCTGCGCTGCGGATCATCAAAAACTTGGGTTATTACAGAGTGCACTACGTGCACTTTGT ATGGATCGTTTTGTTCATCGCCCTCATTCCAGCTAGGAAGGTGTCCTTGATTTACATGGTTATCATGACTTATGCTTCGTCCCTTTACATGCTCATCTTA CGCACATTTCCAGATTCCTATTTCCTTAACAAGCTCGTCGACAAGCGTCTCGTGTTAAGCCTAATTGTGGTTACGACGATGCTTGAACTCATCTTCACTA AGGCTGCTTTACATCTTCTCATCACTCTGGTAGCCACCATACCTTTAGTGTTGATTCACGCAGCTTTGTGGATCGGAGAGCATCTCATAGCCGGAGAAAA GGAGTCTGTGAAGGGCTTTCTGCCAATTGTGCAGGAGTTTCCAGCAACAGAATCATAA
AA sequence Show only first row Show all	>Lus10008600 pacid=23180101 polypeptide=Lus10008600 locus=Lus10008600.g ID=Lus10008600.BGIv1.0 annot-version=v1.0 MAGYGTIQQRAHSTTSSGSDSQRDAANLKRPEFHLVCPLSIPSSPEAAALRIIKNLGYYRVHYVHFVWIVLFIALIPARKVSLIYMVIMTYASSLYMLIL RTFPDSYFLNKLVDKRLVLSLIVVTTMLELIFTKAALHLLITLVATIPLVLIHAALWIGEHLIAGEKESVKGFLPIVQEFPATES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	1.0	0.8676
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	11.7	0.7456
AT4G27290			S-locus lectin protein kinase ...		Lus10039733 [exp]	12.3	0.7142
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	17.5	0.7438
					Lus10041761 [exp]	21.8	0.7134
AT1G10340			Ankyrin repeat family protein ...		Lus10037894 [exp]	22.8	0.7733
					Lus10039654 [exp]	25.8	0.7406
AT1G79910			Regulator of Vps4 activity in ...		Lus10037536 [exp]	26.1	0.7851
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	27.2	0.7756
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	38.2	0.7076

Compare expression of checked genes

Lus10008600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.