Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56320 49 / 5e-07 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G03090 47 / 1e-06 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042272 [exp] 100 / 3e-25 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10042214 [exp] 81 / 2e-18 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10008603 [exp] 76 / 1e-16 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10017530 [exp] 49 / 6e-07 AT5G22660 55 / 8e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10028664 [exp] 45 / 8e-06 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10010841 [exp] 45 / 1e-05 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10037164 [exp] 43 / 6e-05 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034465 [exp] 41 / 0.0002 AT2G03090 273 / 5e-92 EXPANSIN 15, expansin A15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154700 [exp] 48 / 6e-07 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.017G085300 [exp] 44 / 1e-05 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.006G086100 [exp] 42 / 6e-05 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.019G057500 [exp] 40 / 0.0005 AT2G40610 374 / 2e-132 expansin A8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008602 pacid=23180092 polypeptide=Lus10008602 locus=Lus10008602.g ID=Lus10008602.BGIv1.0 annot-version=v1.0 ATGGCGCATTGCCCCTTTTCGCTTACGAATCAGAAGTTTGAATGCTTTGAATTCATCGGCTATGTGTTAGATTTGATTGAAAACAGAGAACCAGAAGAGA TTGACATTTCCTGTAAGCATCTATTGCTGGATACCCAGTTGATTAACAACCACCCCAGGCTGAGAATCCTCAAACTATCCTACTGCGGCTTCAGGCAACC TCCACCCACCAATCATCCCGAGATTATGATGATTAATGTCTGTGTGCTTCATATGTCCTATTTCAGAATGAAAGAAGTTGTTCTGAATGCCTTGATCGCA GGTGCTCCTCTGTTAGAGCCAGAGGAATTGAAACTGTGTGCCCCTCGCAGAAACTGTAGCAACCGCATGAACGTCACCGGCGCCGCCAACGTTGGTCACC AGTACCAGGTTGAAGTACGAGTGGCCGTTGATGGTAAATCTGATTCCTCCTTTCTTCCAGCAAGGCACCCTACAATATACCCAAACGAAAACATAACTAT GAGTGCTTATTTTGGTTCAACCAGAAATGTAACAGGTTAG
AA sequence Show only first row Show all	>Lus10008602 pacid=23180092 polypeptide=Lus10008602 locus=Lus10008602.g ID=Lus10008602.BGIv1.0 annot-version=v1.0 MAHCPFSLTNQKFECFEFIGYVLDLIENREPEEIDISCKHLLLDTQLINNHPRLRILKLSYCGFRQPPPTNHPEIMMINVCVLHMSYFRMKEVVLNALIA GAPLLEPEELKLCAPRRNCSNRMNVTGAANVGHQYQVEVRVAVDGKSDSSFLPARHPTIYPNENITMSAYFGSTRNVTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008602 [exp]	0	1
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	6.1	0.6817
AT5G55125			Ribosomal protein L31 (.1.2)		Lus10000695 [exp]	9.5	0.5793
AT1G45688			unknown protein		Lus10023652 [exp]	12.3	0.5936
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	13.6	0.6478
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	17.7	0.6146
AT1G07175			unknown protein		Lus10018252 [exp]	19.1	0.6089
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	21.7	0.6310
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	23.2	0.6262
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	29.2	0.6016
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	34.1	0.5986

Compare expression of checked genes

Lus10008602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.