Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40620 263 / 2e-85 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 249 / 1e-80 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G31370 196 / 2e-59 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 189 / 3e-56 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 172 / 7e-49 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 165 / 7e-48 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G21230 160 / 1e-44 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G42380 94 / 1e-21 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT2G12900 93 / 1e-21 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G58120 94 / 2e-21 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042211 [exp] 536 / 0 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10024204 [exp] 401 / 2e-140 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10009907 [exp] 400 / 2e-140 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10012881 [exp] 239 / 2e-76 AT2G40620 290 / 7e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10030531 [exp] 238 / 1e-74 AT2G40620 286 / 4e-93 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018899 [exp] 186 / 2e-56 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 183 / 5e-55 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10029773 [exp] 179 / 3e-53 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 179 / 4e-53 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156900 [exp] 352 / 4e-120 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 346 / 8e-118 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 251 / 3e-81 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 199 / 3e-61 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 197 / 2e-60 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 195 / 2e-58 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 180 / 5e-53 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G125400 [exp] 177 / 1e-50 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 175 / 2e-49 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.001G374200 [exp] 93 / 4e-21 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10008605 pacid=23180112 polypeptide=Lus10008605 locus=Lus10008605.g ID=Lus10008605.BGIv1.0 annot-version=v1.0 ATGGACGCTCACAATCCAATTCCCAATGCACCGCCGTCATCTTCCAACAACCATCACCCTCCACCTCCTCCTTCGCCGGCGCCGCTTCTCTCCGCCGCCA ACTCCAATTCATCCTCCTTCTTTAATGCACGCCCCTTCGCTCCACCCCACGGCGGACACCACCACCGCAGGGCTCTCTCCGAGATGAACTTCCGCTTCCC TGACGACATGGCTATGATGATGATGATGGATCTGTCCCCCTCCGATCCCATGGCATCCGTCGGCGGCGGATCTTCTACTTGTAGTCAAGAGGAGATTGGA TCCGAGGACGACCTCTTCTCTACCTACATTGACGTCGATAAGCTCACCGGCGGAGCCGGAAAATGTGTAAATCGGAACTCCGGTGAGAAGTCGTCCAGGC CGGCGACCAAGCACCGTCACAGCAATTCGGTGGACGGAAGCGCTGCCTATGGAGAGATAATGGACGCGAAGAAAGCTATGCCTCCTGAGAAGCTGGCTGA GCTCTGGAACCTTGATCCCAAGCGCGCCAAAAGGATACTAGCAAACAGACAATCTGCTGCTCGGTCGAAAGAGAGGAAGGCACGTTACATCCTAGAACTT GAGCGTAAAGTTCAGACCCTTCAAACAGAAGCCACCACTCTTTCTGCGCAGCTTACTTTGTTCCAGAGGGATACAACGGGTCTGAGTACTGAAAACACAG AGCTTAAGATTCGATTGCAAGCTATGGAACAACAAGCGCAGTTACGCGATGCTTTAAATGAAGCACTGAAGAAGGAACTCGAGAGGCTAAAAGTTGCTAC TGGAGAACCGATCAGTTCGTCCGAGTCATTTAACTTTGGAATGCATCAATTTCCTTTCACGCCATCAAACATGTTCTCTCATCCACAGCAAGCAATGCCT TCCCAGAACATGCATCAAACAAATAATCACCAGCTCTCTGATGCCATGCAGAACGAATCTCTGGCCCGGTTCCAGGGACTTGATATCAGTAGTAAAGGAC AGCAGAACCTCGTCAAGTCCGAAGAGTACTCCATATCTACAAGTGAAACTAGCTCTTGA
AA sequence Show only first row Show all	>Lus10008605 pacid=23180112 polypeptide=Lus10008605 locus=Lus10008605.g ID=Lus10008605.BGIv1.0 annot-version=v1.0 MDAHNPIPNAPPSSSNNHHPPPPPSPAPLLSAANSNSSSFFNARPFAPPHGGHHHRRALSEMNFRFPDDMAMMMMMDLSPSDPMASVGGGSSTCSQEEIG SEDDLFSTYIDVDKLTGGAGKCVNRNSGEKSSRPATKHRHSNSVDGSAAYGEIMDAKKAMPPEKLAELWNLDPKRAKRILANRQSAARSKERKARYILEL ERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKIRLQAMEQQAQLRDALNEALKKELERLKVATGEPISSSESFNFGMHQFPFTPSNMFSHPQQAMP SQNMHQTNNHQLSDAMQNESLARFQGLDISSKGQQNLVKSEEYSISTSETSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	0	1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	2.8	0.9204
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	5.5	0.9169
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	6.6	0.8859
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	6.7	0.9206
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	8.1	0.9006
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	8.9	0.9231
AT2G47960			unknown protein		Lus10018483 [exp]	9.4	0.8684
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	9.5	0.9240
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10023886 [exp]	11.2	0.9141
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	12.8	0.9109

Compare expression of checked genes

Lus10008605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.