Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38540 82 / 1e-18 ATLTP1, LP1 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) AT5G59310 79 / 1e-17 LTP4 lipid transfer protein 4 (.1) AT5G59320 78 / 3e-17 LTP3 lipid transfer protein 3 (.1) AT2G38530 75 / 3e-16 cdf3, LP2, LTP2 cell growth defect factor-3, lipid transfer protein 2 (.1) AT3G51600 74 / 6e-16 LTP5 lipid transfer protein 5 (.1) AT2G15050 70 / 2e-14 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3) AT5G01870 69 / 4e-14 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G33355 67 / 2e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G08770 62 / 1e-11 LTP6 lipid transfer protein 6 (.1.2) AT3G51590 59 / 1e-10 LTP12 lipid transfer protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042209 [exp] 634 / 0 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10009912 [exp] 257 / 7e-80 AT1G15720 64 / 1e-10 TRF-like 5 (.1) Lus10024200 [exp] 241 / 1e-73 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10042210 [exp] 189 / 1e-58 AT5G59320 86 / 6e-23 lipid transfer protein 3 (.1) Lus10009911 [exp] 111 / 3e-29 AT5G59320 72 / 4e-17 lipid transfer protein 3 (.1) Lus10015279 [exp] 88 / 9e-21 AT5G59320 116 / 6e-35 lipid transfer protein 3 (.1) Lus10024201 [exp] 84 / 8e-20 AT5G59320 57 / 5e-12 lipid transfer protein 3 (.1) Lus10020771 [exp] 92 / 2e-19 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10029226 [exp] 82 / 1e-18 AT5G59310 94 / 3e-26 lipid transfer protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086500 [exp] 87 / 2e-20 AT2G38540 124 / 5e-38 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.004G086600 [exp] 83 / 6e-19 AT2G38540 122 / 3e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.013G154500 [exp] 86 / 2e-17 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G135400 [exp] 76 / 1e-16 AT5G59320 109 / 3e-32 lipid transfer protein 3 (.1) Potri.006G108100 [exp] 75 / 3e-16 AT2G38540 121 / 6e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.016G136000 [exp] 72 / 5e-15 AT5G01870 113 / 1e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135800 [exp] 69 / 3e-14 AT5G01870 111 / 1e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232900 [exp] 61 / 3e-11 AT2G18370 100 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135500 [exp] 61 / 3e-11 AT5G59320 94 / 8e-26 lipid transfer protein 3 (.1) Potri.001G232700 [exp] 59 / 1e-10 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008606 pacid=23180055 polypeptide=Lus10008606 locus=Lus10008606.g ID=Lus10008606.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCACGGGAGCCGGACAAAGACTTATCAAGGTGGGCTCTGGATTTCCTTCTCCGGCAACCAATTCCCGGCATTCTCCTGGAGAAGGTCGCCT TCAGTCTCAAACCACCCTCAGTTGTTGACTATTGCTTGGAAAAGCAGCTCAAACTCAAGCAAATCCAAGACAGCGGAGGAGCCCCAATCTCACAGACGAT GAAAACAGCGTATTGTGCAGTGGCGTTAGAGTTCACGGTTAAGGGAGGGATCCGATCGGAGATCGTTGAGCGAATCTGGAGAGGGAGAGTTCATAATTTG GAGAGTTTGAGCAGGATGAGTGAATTGGTCACTGATGAGCTTAGGAAGTTCAAGGATGAGATCGAGGCCGCTGCCTGCGACGTAAATGCTTGCATGAGAT TGTTCAAATGGACGAAGCAGAACGATGCAAAGCTTCTCGTTCGTGCTTATTTAGATGAGGCGATGTCGGCTAATAAAGAGCCTTCCTTTCTTGATTTGGC GGCTGCTAGATGGAAAAAGATGGAGGCGGAGAAGAAAAAGACGACAGAAGAAGGGATGGATACTGGGTTCATACGAGTTCCTAATCATGTTGAACAGCCC ATTTCTGAGTCACCGGATGCCAATTTAAGGAAGAGGACCAACTTGTATAGCAGAGTGAAACAGATTGCTCTCCGCAAACGCCAGAAAAGGCAAGCTAGGA TTTGGGACAATCCCTCAAGCAAGTATGATACATTGCCTAGCCCTGAAGTTAAGCAAGTACAAGATGCATTCAGATCATCTTCCATGGATTTACAAGCAGT GGTCACTGATCCACTTCCTGATGCTATGCATGTCTCCGAGTCATTAATTGCTGAAGCACCTCCGAACATCATCACCAACAAGGAGAAATCAGTTGGAAAC CAGAATGAGGATAATGTGGGTGCTTCCCACCTGCCTGCCGAATCCAGTGTGCCTGAATTACGTAGCGGAACTCTAGATCCTGATATTCCAGCTGAAGAAG GTAACAGGGAAAAGGTGGATGAACCAGAACCCTCTACTCAGCAGAATCATCAAAATGTTTCTAGACCAAGCTTAATGACACGGAATCCAACTGCTTGTAC ATATGGGTCCCTGGAGCTGGCTACTCTCTCCTTCCTAATCACCACATTACTGTTGGTCGCCGCCACCACCAACGCGAATGCGGAAACCACGATAACCTGC GGCCAGGTGACCGCTCTCCTCACTCCATGCATCCCTTATGGGATCATGGGAGGTGTCTTCCCACCGGGGTGTTGCTCCGGCCTCACACAGCTCGACGCAG CAGAGAAGACCACCGAGGACAGACAAACTGCCTGCCGCTGTGTAGTGGATGGTGCTGCTGGGATACCTGGGCTCAACTACGACAGGGTGAATGAGCTTCC TGGGTTATGCAACACTACTTGCCCCTATAAAGTTTACCCTGACACTGACTGCTCTAAGTAA
AA sequence Show only first row Show all	>Lus10008606 pacid=23180055 polypeptide=Lus10008606 locus=Lus10008606.g ID=Lus10008606.BGIv1.0 annot-version=v1.0 MAAAREPDKDLSRWALDFLLRQPIPGILLEKVAFSLKPPSVVDYCLEKQLKLKQIQDSGGAPISQTMKTAYCAVALEFTVKGGIRSEIVERIWRGRVHNL ESLSRMSELVTDELRKFKDEIEAAACDVNACMRLFKWTKQNDAKLLVRAYLDEAMSANKEPSFLDLAAARWKKMEAEKKKTTEEGMDTGFIRVPNHVEQP ISESPDANLRKRTNLYSRVKQIALRKRQKRQARIWDNPSSKYDTLPSPEVKQVQDAFRSSSMDLQAVVTDPLPDAMHVSESLIAEAPPNIITNKEKSVGN QNEDNVGASHLPAESSVPELRSGTLDPDIPAEEGNREKVDEPEPSTQQNHQNVSRPSLMTRNPTACTYGSLELATLSFLITTLLLVAATTNANAETTITC GQVTALLTPCIPYGIMGGVFPPGCCSGLTQLDAAEKTTEDRQTACRCVVDGAAGIPGLNYDRVNELPGLCNTTCPYKVYPDTDCSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10008606 [exp]	0	1
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	6.9	0.8678
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10008330 [exp]	10.8	0.8636
AT1G11050			Protein kinase superfamily pro...		Lus10028553 [exp]	11.9	0.8780
AT1G76750			Protein of unknown function (D...		Lus10004548 [exp]	13.3	0.8719
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036310 [exp]	17.1	0.8789
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	22.6	0.7978
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10002576 [exp]	26.3	0.8145
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	30.5	0.8658
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	31.0	0.8156
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	31.9	0.8428

Compare expression of checked genes

Lus10008606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.