Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53600 481 / 2e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G32415 266 / 8e-81 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 229 / 8e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 214 / 3e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 207 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62260 201 / 2e-57 MEF9 mitochondrial editing factor 9 (.1) AT1G09410 198 / 4e-56 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G19720 194 / 1e-53 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G61170 191 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 182 / 8e-51 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042207 [exp] 410 / 2e-141 AT1G53600 406 / 6e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042208 [exp] 315 / 3e-107 AT1G53600 140 / 4e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 249 / 2e-74 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030549 [exp] 237 / 7e-70 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 229 / 6e-68 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016390 [exp] 214 / 4e-63 AT2G13600 226 / 6e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 215 / 5e-62 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 207 / 3e-59 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 202 / 3e-57 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087300 [exp] 280 / 3e-86 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G048800 [exp] 263 / 2e-79 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 242 / 6e-72 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 219 / 5e-64 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 215 / 4e-62 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 209 / 4e-60 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 208 / 2e-59 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G139200 [exp] 206 / 3e-59 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.016G038400 [exp] 204 / 8e-59 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G072500 [exp] 202 / 1e-58 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008607 pacid=23180106 polypeptide=Lus10008607 locus=Lus10008607.g ID=Lus10008607.BGIv1.0 annot-version=v1.0 ATGAAAGGGCTTGCTGTTCTCCCTCGCCACGTTTCCGTGTTGAAATTTTCAGTCTTCAGACGTTACTACTCGAAACCGGTTCAGAGGCGTGAACCCTATG ACAAGTTATTGGTTCACTGCAATTCCCAGATCACCAAGCATGGGAGAGAGGGCAGCATTCAGAATTCCGAGGAGATCTTCAGACGAATGTCTAGCAAGAC CACTGTTTCTTACACTGCTATGCTCACCGCGTACTCTCAGAACAGCCAGCTCGCAAAGGCACGGAAGGTATTCGACGAGATGCCCTGCAGAACTACTGCT TCGTACAATGCAATGATCACAGCCTATGTGAGAAATGGTTGTAAGGTGAACGAGGCCTTCAGTTTGTTTTCGCAGATGGATGAATGGAACGAGGTTACTT TTGGGACCATGATTACGGGGTTCGTTAGGGCTGGGATGTTTGAAAGGGCTTGGGAGTTGTATGGGCAGATGCCGGCTGATTTGCGTGATCCTATTTGTTC CAATGTGATGATTGATGGGTATCTGAAATCGGGGAAGCTGGAGCAGGCTATTCGTGTTTTTAATAGCATGGTGAAGAGAGATATTGTTTCTTGGAGTGCT ATGGTTGACGGTTTTTGTAAGGAAGGGAGGATTTTTGAAGCTAAGAACCTGTTTGATGTGATGCCAGAAAGAAATGTAGTTTCTTGGACGTCGATGATTG ATGGCTACATGAACAATGGATTGTTCAAGGATGGGTTTGATTTGTTTATTCGTATGAGGGAGGAAGGAGTTGCCGACACTAATCCAAATATCACAACAGT AATGTTTGAAGCTTGTAGTAATTTCCAAGCACTTAGAGAAGGGATACAGATGCATGGTTTGGTCCTGCGCCTTGGATTTGCATTGGATGTATTTTTAGGA AATTCTGTTATTACAATGTACTGCAGATGTGGTTGCATGAATGAAGCAAACAAAGTATTTCAATCGATCGAGAAGAAAGATATTGTTTCCTGGAATTCGT TGATTGCTGGTTATATTCAACATGATGAAATTGAGAAAGCTTATGAGCTCTTCGAGGTGATGCCACAAAGAGATTCCTTTTCATGGACGTCCATAATCTC AGGATATCTTGGCAAGGGAAGAGTAGAAAGATCTATCCAGTTATTCAAAATGATGCCTGTGAAAGATGATGTTGCTTGGACTGCTGTAATTTCAGGCTTT GTTGACAAGGAAATGTGTCGAGAGGCTTTTACTTGGTTTATTGATATGCTAAGGGATTCAGTTTTTCCAAACTCGATTACACTAAGTAGCATGCTAAGTG CTTCAGCTTACTTAGCAACACAAAGGGCAGGAATGCAGATCCACAGTCTTGCGGTGAAAAGTAGTCTGGAATATGATTTGTTCATTCAGAATTCATTGGT TTCAATGTATTCAAAGTGTGGTAATGTCGCTGAAGCTTATTGA
AA sequence Show only first row Show all	>Lus10008607 pacid=23180106 polypeptide=Lus10008607 locus=Lus10008607.g ID=Lus10008607.BGIv1.0 annot-version=v1.0 MKGLAVLPRHVSVLKFSVFRRYYSKPVQRREPYDKLLVHCNSQITKHGREGSIQNSEEIFRRMSSKTTVSYTAMLTAYSQNSQLAKARKVFDEMPCRTTA SYNAMITAYVRNGCKVNEAFSLFSQMDEWNEVTFGTMITGFVRAGMFERAWELYGQMPADLRDPICSNVMIDGYLKSGKLEQAIRVFNSMVKRDIVSWSA MVDGFCKEGRIFEAKNLFDVMPERNVVSWTSMIDGYMNNGLFKDGFDLFIRMREEGVADTNPNITTVMFEACSNFQALREGIQMHGLVLRLGFALDVFLG NSVITMYCRCGCMNEANKVFQSIEKKDIVSWNSLIAGYIQHDEIEKAYELFEVMPQRDSFSWTSIISGYLGKGRVERSIQLFKMMPVKDDVAWTAVISGF VDKEMCREAFTWFIDMLRDSVFPNSITLSSMLSASAYLATQRAGMQIHSLAVKSSLEYDLFIQNSLVSMYSKCGNVAEAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10008607 [exp]	0	1
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	11.6	0.8525
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	12.2	0.8572
AT5G66810			unknown protein		Lus10022461 [exp]	12.3	0.8540
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	20.4	0.8048
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	20.6	0.8521
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	31.5	0.8135
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	32.6	0.8453
AT5G26760			unknown protein		Lus10005906 [exp]	35.3	0.8198
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	35.8	0.8267
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	42.2	0.8250

Compare expression of checked genes

Lus10008607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.