Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 50 / 2e-06 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT4G34390 47 / 2e-05 XLG2 extra-large GTP-binding protein 2 (.1) AT2G23460 46 / 3e-05 ATXLG1, XLG1 extra-large G-protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042206 [exp] 625 / 0 AT1G31930 54 / 1e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10009897 [exp] 240 / 1e-77 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10024210 [exp] 235 / 1e-75 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 55 / 5e-08 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 54 / 9e-08 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10023838 [exp] 49 / 5e-06 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 47 / 1e-05 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 46 / 4e-05 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130200 [exp] 210 / 1e-65 AT1G31930 50 / 1e-06 extra-large GTP-binding protein 3 (.1.2.3) Potri.013G157100 [exp] 164 / 8e-48 AT1G31930 51 / 8e-07 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 53 / 2e-07 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 53 / 2e-07 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.009G109400 [exp] 49 / 2e-06 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 47 / 1e-05 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 45 / 4e-05 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 45 / 5e-05 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.015G031100 [exp] 45 / 7e-05 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.005G131200 [exp] 45 / 9e-05 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008608 pacid=23180060 polypeptide=Lus10008608 locus=Lus10008608.g ID=Lus10008608.BGIv1.0 annot-version=v1.0 ATGGGGGAGAGCACCATTAGAACGGTGGCGATGGCAAGAATGGAGCTGGAGGAGCTCTACTCGGGCATCCCCGACGAGTCTGTCAACCTGACCTTCCAAG ACATGGCTCAGGTTGAACAACACGAGAAATCCAACTCGATTGATACGAGTTCTAAGCTTAAAGAGCTGGCCAGAATTTCATCCCTCGATTTCAACCGAGG CTTGGAAGCCACCCGGGTAGTCGAAGGCCAAACGGCAATGACAGAGGACGGCCACAATACTAGTGGCCGACAAATGCAGGGCGGCTCAACGGTAGCTGTG AAGTCACCCAACCGCTTGGACCACAACGTTGTCATAATGACAATGGAGGATGTGTCATACGAGAGTGTGATAAGCACTAAGCAGGATTCGAGTGGCCCAT TGGGCTCTCCCGTCCCCAACCATGGGGTTTCCGGGTCCGATCGTTACCAGACACCGTCCTCGTCTACTCGTCATCATTACCGCCGTCTGAGCGGTGGGTC TACACCGCGGTCAACCTATAGTGCTAGTTACGAAGCGAGTCCGACGAGCCTAGGTACGTGCGGGACACCGTTGTATGACGTGGTGGTGGATAAAGGACGT AGACAAGGCATCCCTCATTCCAATATTTGTACCATTTGCTCAACTTCCATCTATTTCTTCAAGAACCGGTGCCTGGTTTGTGGAAGAGTGTACTGCAAGA AATGTGTGGAATTGGGGATGGGGAACATGCACGAAGGAAGGAAATGCACAGAATGTGTAGGCAGAAGATTTAGTGCAAGGTGGGGTGCTTATCTCGTTCC GGTGACGGTGAAGCAGGCGGAGCTGAAATGGGCGGAGAAAGGGCCGAGGAAGAATGGTGAGCGTGCATACGGCCAGCAGGCTCACCGCCTTAACCATGGA TCTACTATACCCAGGACGAAGCCCCCATTGATGTCCTCCAGGAACCCAGCGCCTTCATATCCCGCTGGCTCGATTTATTCTCCCTATACTCCAACTCACC ACCATCTCCCGCTATAG
AA sequence Show only first row Show all	>Lus10008608 pacid=23180060 polypeptide=Lus10008608 locus=Lus10008608.g ID=Lus10008608.BGIv1.0 annot-version=v1.0 MGESTIRTVAMARMELEELYSGIPDESVNLTFQDMAQVEQHEKSNSIDTSSKLKELARISSLDFNRGLEATRVVEGQTAMTEDGHNTSGRQMQGGSTVAV KSPNRLDHNVVIMTMEDVSYESVISTKQDSSGPLGSPVPNHGVSGSDRYQTPSSSTRHHYRRLSGGSTPRSTYSASYEASPTSLGTCGTPLYDVVVDKGR RQGIPHSNICTICSTSIYFFKNRCLVCGRVYCKKCVELGMGNMHEGRKCTECVGRRFSARWGAYLVPVTVKQAELKWAEKGPRKNGERAYGQQAHRLNHG STIPRTKPPLMSSRNPAPSYPAGSIYSPYTPTHHHLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	0	1
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	3.5	0.9698
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	7.1	0.9508
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	7.5	0.9573
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	9.3	0.9536
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	9.6	0.9534
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	9.8	0.8749
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016273 [exp]	10.4	0.9441
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10027726 [exp]	10.8	0.8638
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	11.6	0.9119
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	13.0	0.9209

Compare expression of checked genes

Lus10008608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.