Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 352 / 1e-111 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 347 / 3e-110 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 326 / 3e-102 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G35380 324 / 9e-102 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 316 / 2e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 297 / 7e-92 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 212 / 5e-60 protein kinase family protein (.1) AT2G07020 202 / 2e-56 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 187 / 1e-50 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 169 / 1e-44 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042205 [exp] 909 / 0 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 503 / 2e-170 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 498 / 6e-167 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 364 / 3e-116 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 353 / 2e-112 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 240 / 1e-71 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 239 / 3e-69 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 224 / 6e-66 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 216 / 1e-62 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 340 / 4e-108 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 337 / 2e-106 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 336 / 1e-105 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 209 / 1e-58 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 206 / 1e-57 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 198 / 2e-54 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 195 / 2e-54 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 194 / 4e-53 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 194 / 5e-53 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 144 / 3e-36 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10008609 pacid=23180105 polypeptide=Lus10008609 locus=Lus10008609.g ID=Lus10008609.BGIv1.0 annot-version=v1.0 ATGGTAACGGCCACCATCAAGAGGTATTCCGGAGACAAGAAGAGCAAACAATTGGTGGCGATCGCCGTCGACAAGGACAAAGGCAGCCAAAACGCCTTGA AATGGACCGTTGAGCATTTGGTTTCCAGAGGCGAGACCGTCATTCTTCTCCATGTCAAGCAAAAACCACCCGGACCTAGACTCCCTAATGCCCACTCCGA TCCGGGCGACGGTGACAACGGTGGCAAAATTCAGCCATTGGATGCCCAAACAAAAGAGCTTTTACTCCCGTTCCGATACTATTGCTCCCGCAAAGAGATA AAAACGATAGAAGCAGTGGTTGAAGAGACCGATATAGCCAAAGGCATCATCCATTACTGCGTAGCAAATGCGGTGGAGGCGCTTGTACTCGGAACGCCGG ATCGCGGCGGCTTTCTCAAGTCTGTTTCTTCATTTCCGCCATTAATGTTCCCCTTTCTCTCTACTCACGAATCGCTCGAAAACAATTGCAGAAGATTCAA GACGACGGATGTCCCCACCACCGTTATGAAAGGAATCCCCGACTACTGCAACGTCTACGTCATCAGCAAAGGCAAGATCTCAACCATCCGAAACGCCTCC GCTCCAGCTCCTTCCCGCCCAATATCCACCATCGCCAGGAGCTCCTCCGATTCCGATCAGATCCCTGAAGTACTACCCAAAAACAAGTCTCGGAGAGGTT TTCCAGAGGTCGCTGATTACTCACCGCCTCGGACGTCATCGGCGAGAAGCAGCAGAGCTCCGAGCATAGCGGATACGGACATTTCTTTTGTGAGCGTCAG CAGCAGCGCTGCTGCTGATGGCGCCGAGGGCGCCGGGTATGGAAGAATGAGCGCCGATCGAATCATTTTCCCTTCCTACGACAATAGCGAATTCGGCGAT ATGCGTGTCTCCAACTGCGACACGATGAGCGTGGCGTCTTCTTACTCGGGAGGTGGCGGTACGACGCCTCTTGAGTACTTCGGAGGCGGCTACAGTGATT TCTCTTCCACTTCTGATATTGATGGCCCTAGGCTTTCCTCTGCTTCCCAAGGCATCGAAGATCCAGAGTCTGAGGTGAGAAGGCTCAGGCTGGAGCTGAA ACAAACAATGGATATGTACAATAACGCTTGTAAAGAAGCTCTTACTGCAAAAACTAAGGCGAAGGAGCTACAGAGATGGAAAGCCGATAAGCAACAGAGG GTAGAGATGTCCAAAACGGTAGAGGAAGTTGCATTAGCAGCAGCAGAGGAAGAAAAGGCCAAACGCAGGACAGCCATGGAAGCAGCCCAATACGCTAAGA TGATCGCCGAAAAGGAAGCTCGGAAGAGAAGAAGCATGATAACAACGTCGGCTAGCAGTAGCACTACTGAGTCAGGAGAATGGAAACAGAACGACAATAA GGAACTCCGCTGCCGTCAATACACAATCGACGAGATCAAACAAGCCACCAACGACTTCTCCGCTTCGCTCAAAATCGGTGAAGGAGGATACGGCCCAGTC TACCGCTGCAACCTCGACCACACTGCCGTAGCAATCAAGTCCCTCCGCCCTGATGCTGCACAAGGGAAAGCTCAATTCCAGCAAGAGGTCGATGTGCTGT CACGAATCCGCCATCCAAACATGGTCCTCTTGATGGGAGCTTGCCCCGACCAAGGCTGTTTAGTCTACGAGTACATGGCCAACGGAAGCTTAGACGACCG CCTCTCAAGGAGAGGCAACACTCCGCCGCTATACTGGCNNNNNNNNNNNNNNAAGCGGACATCATAG
AA sequence Show only first row Show all	>Lus10008609 pacid=23180105 polypeptide=Lus10008609 locus=Lus10008609.g ID=Lus10008609.BGIv1.0 annot-version=v1.0 MVTATIKRYSGDKKSKQLVAIAVDKDKGSQNALKWTVEHLVSRGETVILLHVKQKPPGPRLPNAHSDPGDGDNGGKIQPLDAQTKELLLPFRYYCSRKEI KTIEAVVEETDIAKGIIHYCVANAVEALVLGTPDRGGFLKSVSSFPPLMFPFLSTHESLENNCRRFKTTDVPTTVMKGIPDYCNVYVISKGKISTIRNAS APAPSRPISTIARSSSDSDQIPEVLPKNKSRRGFPEVADYSPPRTSSARSSRAPSIADTDISFVSVSSSAAADGAEGAGYGRMSADRIIFPSYDNSEFGD MRVSNCDTMSVASSYSGGGGTTPLEYFGGGYSDFSSTSDIDGPRLSSASQGIEDPESEVRRLRLELKQTMDMYNNACKEALTAKTKAKELQRWKADKQQR VEMSKTVEEVALAAAEEEKAKRRTAMEAAQYAKMIAEKEARKRRSMITTSASSSTTESGEWKQNDNKELRCRQYTIDEIKQATNDFSASLKIGEGGYGPV YRCNLDHTAVAIKSLRPDAAQGKAQFQQEVDVLSRIRHPNMVLLMGACPDQGCLVYEYMANGSLDDRLSRRGNTPPLYWXXXXXKRTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16760			Protein kinase protein with ad...		Lus10008609 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Lus10008610 [exp]	1.0	0.9108
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10036042 [exp]	1.4	0.8343
AT1G54120			unknown protein		Lus10008114 [exp]	6.7	0.8327
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	11.5	0.8209
					Lus10040471 [exp]	13.3	0.7310
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	15.3	0.8037
AT5G64180			unknown protein		Lus10008120 [exp]	17.9	0.7973
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	21.9	0.8080
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	25.9	0.7703
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	27.5	0.7689

Compare expression of checked genes

Lus10008609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.