Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 347 / 5e-113 ATTPS21 terpene synthase 21 (.1.2) AT3G14540 330 / 1e-105 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 322 / 2e-102 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 318 / 7e-101 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 313 / 4e-99 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 312 / 1e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 310 / 1e-97 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 291 / 4e-91 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 288 / 1e-89 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20230 282 / 4e-87 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042204 [exp] 909 / 0 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10042202 [exp] 749 / 0 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008614 [exp] 734 / 0 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10014724 [exp] 566 / 0 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10002660 [exp] 555 / 0 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10040043 [exp] 541 / 0 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10031590 [exp] 446 / 3e-151 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 342 / 3e-110 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10033643 [exp] 277 / 5e-85 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 536 / 0 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 476 / 5e-163 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 467 / 2e-159 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 438 / 6e-148 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 364 / 2e-119 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 360 / 6e-118 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 355 / 1e-115 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 354 / 2e-115 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 350 / 4e-114 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 347 / 2e-112 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10008611 pacid=23180113 polypeptide=Lus10008611 locus=Lus10008611.g ID=Lus10008611.BGIv1.0 annot-version=v1.0 ATGGAGAGTAGTGATGATGAAGCTATTGGTCGCCGGACGGCGAAGTTCCATCCTTCACCATGGGGTGACTTCTTCCTCACCCACCTCTTCCAAACCGATG AGGTTGTAGAAGAGTGGAACGAAAGAATTGAAACTTTGAAACCTGACGTGGCGAGGAAGTTGTTAGCTCCGACGTCGTCTTCGACCATGCCGGAGAAGTT GGATCTAGTGGATGTGGTTCAACGACTAGGGATTGGTTACCATTTCGAGGAAGAAATCCAGCAACTCCTCCAACAAGTTCATCATCATAATGAAAATGTT GATTACGATGATCTCAAGACAGTTTCACTCCGTTTCAGGTTGCTCAGACAACATGGCCTCGATGTGCCCTCTGATATATTCAAGAGATTCAAGGCTGAAG ATGGAGGGTTCAAGGAAGAATTAGCAAAGGACGTTGAAGGAATATTAAGCTTATACGAAGCTGGATACATGAGGAAGCAAGGAGAAGATATACTAGACGA AGCAATCCAGTTCACAAAATCACACCTCAATGCTGCAGTAATACTAATGGATACAGAATTACACTCTCCATCATCTCAAGTACTAATGGCTAAACGAATC AGCCATGCATTGGAAAGGCCACTTGGTAAAGGAGTACCCAAGGTTGAGCAACTGTTCTTCATCTCTGTTTATGAACAAATGGACGGCCACGATGAAACCC TGCTAACCTTGGCCAAGCTAAGTTTCAATGTGCTGCAGAACATGTACCAGAAGGAGCTCAAAGCCCTTACCAAGAAATTGAATTTTAAGCATGCATGTTA CGCTACTCTAATGTATAACATACGTAGGTGGTGGATTGATTTGGATTTGATAAGGAGGGTGAAATATGCTCGAGACAAGTTAATTGAGATTTACTTTTGG ACTATTGGAAGCATGTGGGAGCCTAGATTTGGCTTGGCTAGATACACTTTTACCATTTCGAATGTTCTTGATTCGGTGTTCGACGACACCTATGATGCTT ACGGCACCATCCAAGAGCTTGAGCTCTTCACTGCTGCAATTCTAAGATGGGATACAAGCATGAAAGGTGTCAATTATAAAATGAAAATCCTTTTTGAAGC AAAGCTTGCTGTCATCGACGAACTCGATGCGATTACTTCAAAAGAAGGGCGGTCTTACTGTTTGCGATATGTCAAGTTAGCGCTTCAAACTCTGGCCAAG TTATATTTGGAAGAAGCCAGATGGTTTGCCAGGAAACATGTGCCATCCTTAGACGAATACAGACAAGTTTCTTCCTTAAGCACCACTTACCAATCGATTG TTTGTGCTACACTATGCGGGTTGGGTGAACTAGCTACTAAACAAGTGTTTGATTGGATATTCAGTAATCCCAAAATTTTAGTAGCTTCTTCCGACCAATG CCGTCTCATGGATGATATTGTTTCTCACAAGTTCGAGCAAGAAAGAGGGCATGTTGCTTCATCGGTGGAATGTCACATGACACACTATGGGATATCGAGG GAGGAAGCGGTGGATGCATTAAACAAAATGGTGGAGGATGACTGGAAAATCGTAAACGAAGAATTATTGAATCCACAAAACCGAAATATACCAAAAGAAG TGTTATCATTGTTCCTAAGGTATGAGCAGATGATGGATATGCTATACAAGCACTCCGATGGCTATACACACTCCAACACTTGGACCAAGGATATGCTTAC AGCTTTACTCGTCAACCCGCTTCCCACTAATTAG
AA sequence Show only first row Show all	>Lus10008611 pacid=23180113 polypeptide=Lus10008611 locus=Lus10008611.g ID=Lus10008611.BGIv1.0 annot-version=v1.0 MESSDDEAIGRRTAKFHPSPWGDFFLTHLFQTDEVVEEWNERIETLKPDVARKLLAPTSSSTMPEKLDLVDVVQRLGIGYHFEEEIQQLLQQVHHHNENV DYDDLKTVSLRFRLLRQHGLDVPSDIFKRFKAEDGGFKEELAKDVEGILSLYEAGYMRKQGEDILDEAIQFTKSHLNAAVILMDTELHSPSSQVLMAKRI SHALERPLGKGVPKVEQLFFISVYEQMDGHDETLLTLAKLSFNVLQNMYQKELKALTKKLNFKHACYATLMYNIRRWWIDLDLIRRVKYARDKLIEIYFW TIGSMWEPRFGLARYTFTISNVLDSVFDDTYDAYGTIQELELFTAAILRWDTSMKGVNYKMKILFEAKLAVIDELDAITSKEGRSYCLRYVKLALQTLAK LYLEEARWFARKHVPSLDEYRQVSSLSTTYQSIVCATLCGLGELATKQVFDWIFSNPKILVASSDQCRLMDDIVSHKFEQERGHVASSVECHMTHYGISR EEAVDALNKMVEDDWKIVNEELLNPQNRNIPKEVLSLFLRYEQMMDMLYKHSDGYTHSNTWTKDMLTALLVNPLPTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	0	1
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	1.0	0.9489
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	1.4	0.9369
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	4.7	0.8942
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	4.9	0.9345
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	5.7	0.8985
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	6.0	0.9010
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	6.3	0.9318
AT2G39170			unknown protein		Lus10028816 [exp]	7.1	0.8756
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	7.1	0.8977
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	9.7	0.9279

Compare expression of checked genes

Lus10008611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.