Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 339 / 2e-110 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 295 / 1e-92 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 283 / 8e-88 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 281 / 2e-87 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 280 / 7e-87 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 275 / 4e-85 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 273 / 4e-84 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G48800 266 / 9e-82 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 265 / 9e-82 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 264 / 2e-81 AtTPS02 terpene synthase 02 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042202 [exp] 815 / 0 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008611 [exp] 734 / 0 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 725 / 0 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 507 / 9e-176 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10040043 [exp] 483 / 4e-166 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10014724 [exp] 482 / 5e-166 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10031590 [exp] 399 / 2e-133 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 325 / 5e-104 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10033643 [exp] 251 / 1e-75 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 478 / 3e-164 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 417 / 1e-140 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 417 / 2e-140 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 409 / 2e-137 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 361 / 7e-119 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 357 / 5e-117 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 354 / 5e-116 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 350 / 3e-114 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 347 / 1e-113 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 342 / 2e-111 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10008614 pacid=23180078 polypeptide=Lus10008614 locus=Lus10008614.g ID=Lus10008614.BGIv1.0 annot-version=v1.0 ATGCAGAGTAATGGTGAAGCTGATGTTCATCGTCCCACAGCAAAATTCCACCCCTCACCATGGGACGACTTCTTCATTACCCACGTCTTCCAATCTGATG AGGTCGTAAGAGACTGGAACGAAAGAATTGAAGCATTGAAACCTGAAGTGGTCAGGATGCTGATAGCTTCGGAAGAACCACTCTCGGAGAAGTTGAATCT AGTGGATGTGATTCAACGATTAGGACTCGGTTACCATTTCGAGGAAGAAATCCAACGACTCCTACAACAAGTTTATGCAGACCACTGCAGTACTACTGCT GTTGATCATCACGATTATGATCTCTGCACAACATCTCTCTGTTTCAGGCTGCTTAGACAACATGGCTACGATGTGTCCACTGACATATTCAGGAAGTTCA TGACAGAAGAAGGAAAGTTCCAGAAAGAAATAGCAGAGGACATGGAAGGAATGTTAAGCTTGTACGAAGCTGGATACATGAGGAAGCGAGGAGAGAGTGT ATTAGACGAAGCAATCGACTTCACAAAATCACACCTCAACTCCGCAGCAATGGCGACGACAGAATTAGATTCATCGCTAGCTGATCGAATCAGTCATGCA TTGGAAAGGCCACTTCACAAAGGAGTGGCCAAGGTTGAGCAACTCTTCTTCATCTCTGTTTATGAACAAATGAACCCCCACGATGAAACCTTGCTAACCT TGGCCAAGCTCAGCTACAATGTCATTCAGAACATGTACCAAAATGAGCTCAAAGTCCTTACCAAGTGGTGGATTGATTCTGATTTGAAATGGAGGCTGCC GTATGTCCGAGATAAGTTAATTGAAGTTTACTTCTGGGCTATTGGAACTATGTGGGAGCCCAAATTTTCAATGGCGAGATACACTTTTACCATTGTTATT GTTCTTTGTTCACTGTACAACGATACCTATGATGCTTATGGCACCATACAAGAGCTTGAGATGTTCACCGCTGCCATTGAAAGATGGGATATTAGCATGA AAGGTGTCAACCATAAGATGAAAATCCTGTTTGAGGCAACAGTTACTACCTTTGACATACTCGATCTTAAGAATATGGTTAAGATGTACCTGGCAGAAGC AAGATGGTTCGCCGAATCTTATGTGCCAACCTTAGAGGAATACAGAGGAATCTCTTCATTAAGCACTACTTACCAATCAATGGTTTTTGGCGTACTCTGT GGGTTGGGCAAACTAGGCTCGAGAGAAGTGTTTGATTGGTTATTCACTAATCCTAAAATTTTCGTAGCTTCTGGTGACCAGTGTCGTCTCATGGATGACA TTGCATCTCACAAGTTCGAGCAGGAAAGAGGACATAGTGCATCATCTGTAGAATGTTACATGACACACTACGAGGTGTCGAGGGATGAAGCAGTGGCTGC ATTGAACAAAATTGTGGAGGAGGACTGGAAAATTGTCAACGAAGAATTGTTGAATCCAAAAAATCACTATATTCCTAAAGAAGTGTTGTCATTATTCTTA GGGTACGAGCGGATGATGGATATACTGTACAAGTACTCGGATTGCTACACATTCTCTAACACTTGGACCAAGGATCTGCTCACTACTCTGCTCGTCACTC CTCTTCCCATTAACTAG
AA sequence Show only first row Show all	>Lus10008614 pacid=23180078 polypeptide=Lus10008614 locus=Lus10008614.g ID=Lus10008614.BGIv1.0 annot-version=v1.0 MQSNGEADVHRPTAKFHPSPWDDFFITHVFQSDEVVRDWNERIEALKPEVVRMLIASEEPLSEKLNLVDVIQRLGLGYHFEEEIQRLLQQVYADHCSTTA VDHHDYDLCTTSLCFRLLRQHGYDVSTDIFRKFMTEEGKFQKEIAEDMEGMLSLYEAGYMRKRGESVLDEAIDFTKSHLNSAAMATTELDSSLADRISHA LERPLHKGVAKVEQLFFISVYEQMNPHDETLLTLAKLSYNVIQNMYQNELKVLTKWWIDSDLKWRLPYVRDKLIEVYFWAIGTMWEPKFSMARYTFTIVI VLCSLYNDTYDAYGTIQELEMFTAAIERWDISMKGVNHKMKILFEATVTTFDILDLKNMVKMYLAEARWFAESYVPTLEEYRGISSLSTTYQSMVFGVLC GLGKLGSREVFDWLFTNPKIFVASGDQCRLMDDIASHKFEQERGHSASSVECYMTHYEVSRDEAVAALNKIVEEDWKIVNEELLNPKNHYIPKEVLSLFL GYERMMDILYKYSDCYTFSNTWTKDLLTTLLVTPLPIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	0	1
					Lus10030774 [exp]	1.0	0.9773
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	1.4	0.9707
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	1.7	0.9452
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	2.6	0.9358
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	2.8	0.9412
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	4.5	0.9398
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	4.8	0.8910
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	7.7	0.9397
					Lus10033677 [exp]	9.5	0.8625
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	12.0	0.9302

Compare expression of checked genes

Lus10008614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.