Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33990 367 / 3e-117 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 347 / 3e-109 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 343 / 4e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19191 330 / 1e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 329 / 1e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 323 / 3e-100 unknown protein AT3G12770 318 / 7e-100 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 320 / 2e-99 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 315 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 316 / 1e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042198 [exp] 360 / 2e-122 AT2G01510 182 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 357 / 6e-115 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 344 / 2e-108 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 339 / 7e-106 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 330 / 6e-104 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040648 [exp] 324 / 9e-103 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 328 / 1e-102 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 320 / 4e-100 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 319 / 1e-98 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 367 / 8e-117 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 365 / 2e-116 AT3G22690 582 / 0.0 unknown protein Potri.001G466066 [exp] 347 / 2e-109 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 345 / 1e-108 AT3G22690 570 / 0.0 unknown protein Potri.009G067000 [exp] 341 / 2e-107 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 340 / 1e-106 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 330 / 4e-104 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 329 / 8e-104 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 331 / 2e-103 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 330 / 3e-103 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008618 pacid=23180050 polypeptide=Lus10008618 locus=Lus10008618.g ID=Lus10008618.BGIv1.0 annot-version=v1.0 ATGGCTGCTTGGCGTAATGTGATCCGCCAACTGGATTTACAAAGCGACCCGAATCGGGTGATTTCCACGGTTCAAGCCATTCAGAAGGTGGCCTACGATA GTCCACTTGTGGATGCTTACGCGTACGCTTCTTTGGTCAAGGCTTGCAACAAGTTGACGCATGTTAAAGGAGGGAAATCGGTGCATGGTCGTGTTTTGAA GATTGGGTACGGGAGTAATTTGAATGTTCGGAACAGTTTGATTCATTTCTACGCTAGTTCTGAGATTATGAACTATGCACGCGTACTGTTCGACGAAATG CCCGAAAGAACTGTTGTGACGGTTAATGGTATGCTTTCTGGGTTTTTGAAGAGCAATAGGTTCGGTGAAGGTTTTGGTTTGTTCAGTGAAGCTTTTGGTG ACGGGTTGAGGCCGAGTTACGTTACTATGGTGATCCTGGTATCCGGGTGCGTGGAAGCTGGGGATCACAAAATGCTTGGGAAGCTGCTTCATTCCTTATG CTGGAAAACCAGTCTTGATTCTGAAGTTGAAGTTGGTAATGCTTTGATCGGATTCTACGCGAAATTCGGATGGGTGGATGATGCAGTGAGGCTGTTTAAT GGGATGTCGAACAAGGACTTGGTTTCATGGAACACCATGATTGCAGGGTATGCAAAGAATGGCGGTGATTTAGAAAAGGCCTTCTCTTTGTTTCGAGAAA TGCGAAATCGAGATGTCGGTTACGACAGGGTTTCGTTGGTTAATTTATCATCGGCCTGTGCTTACAGTAGAAATGTTGCAAGGGGAAAGATGGTTCACGG GCATATGATAGTCACTGGAGAAAGCATCAGTCTTTCTGCTGGAACTGTGCTTATTAACATGTATTCGAAATGTGGCTTGGTGGATTACGCTACTCGAGTT TTTCTAGAGCTTCCTAGAGATAACGTTGCCTTGTGGAACTCGATGATTCATGGATATGTTGAAAGTGGGCGCAACAGCAAGGCTCTGGTACTGTTCGACT CAATGAAGTTGAGAAAGATAGTAGCAGATGCGGTAACCATGCTAGGGCTAATCTCCGCTTGTCGAAATTCCGGAGATCTGAGTCGTGGGATCGAGATTCA CTCGTACATAGATGCCCATGATCATCTGAACGGGAAAGTCATCTTGCGGAATGCACTTGTTGACATGTATGCAAAATGTGGGAGTATGGAACAAGCTCGA TCGGTCTTCGATGAGATACCATATAAGGATGTAATCTCTTGGACAACTCTCATTGTAGGTTATGCCATCAATGGTGAAGGAGAGGAAGCTCTCTATGCTT TCCACCAAATGCGTGAGGAAGGAATCAAGCCGAATTTCGTGACATTCATCGGGGTTCTGTCGGCATGTAACCATTCCGGTCTGGTGGAAGTAGGCCAGAA GCTATACGAGATGATGATCGAGGGTGACGGTATTCAGCCAAAGATTGAGCATTACGGATGTATGATCGATATGCTTGCCCGAGCAGGGATGCTCGAGGAG GCGAAGAAGTTCGTGGAGAGTTTGCCGATGGAGCCAAATGCAGCTGTTTGGAGGATGCTGGTTAATGCTTGCAGGGTTCACGGTGATACTAAACTCGGAT TGAGCTCGGTGGCTAACCTCTTTGAGGGGTGGAATTCGACTGTGGTTACTGAGAATCGGGTTATTTGTTCTAACATGTTTGCAGAGGCAGAGAGATGGAA TGAAGTCTTGCAAGAACGATCTTTAATGGTTGCCCAGAAAGATCATAAAGTAGCTGGCAAAAGCTCCATTGTAACGTAA
AA sequence Show only first row Show all	>Lus10008618 pacid=23180050 polypeptide=Lus10008618 locus=Lus10008618.g ID=Lus10008618.BGIv1.0 annot-version=v1.0 MAAWRNVIRQLDLQSDPNRVISTVQAIQKVAYDSPLVDAYAYASLVKACNKLTHVKGGKSVHGRVLKIGYGSNLNVRNSLIHFYASSEIMNYARVLFDEM PERTVVTVNGMLSGFLKSNRFGEGFGLFSEAFGDGLRPSYVTMVILVSGCVEAGDHKMLGKLLHSLCWKTSLDSEVEVGNALIGFYAKFGWVDDAVRLFN GMSNKDLVSWNTMIAGYAKNGGDLEKAFSLFREMRNRDVGYDRVSLVNLSSACAYSRNVARGKMVHGHMIVTGESISLSAGTVLINMYSKCGLVDYATRV FLELPRDNVALWNSMIHGYVESGRNSKALVLFDSMKLRKIVADAVTMLGLISACRNSGDLSRGIEIHSYIDAHDHLNGKVILRNALVDMYAKCGSMEQAR SVFDEIPYKDVISWTTLIVGYAINGEGEEALYAFHQMREEGIKPNFVTFIGVLSACNHSGLVEVGQKLYEMMIEGDGIQPKIEHYGCMIDMLARAGMLEE AKKFVESLPMEPNAAVWRMLVNACRVHGDTKLGLSSVANLFEGWNSTVVTENRVICSNMFAEAERWNEVLQERSLMVAQKDHKVAGKSSIVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10008618 [exp]	0	1
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	6.0	0.8300
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	12.4	0.7706
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	21.8	0.7729
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	31.8	0.7520
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10018198 [exp]	34.5	0.7612
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	35.9	0.7293
AT1G76405			unknown protein		Lus10025160 [exp]	47.5	0.7310
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	55.5	0.7375
AT5G07610			F-box family protein (.1)		Lus10015048 [exp]	63.5	0.7019
AT2G26840			unknown protein		Lus10036059 [exp]	68.5	0.7119

Compare expression of checked genes

Lus10008618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.