Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 669 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 613 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 516 / 2e-177 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 498 / 1e-170 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 497 / 5e-170 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 487 / 3e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 436 / 1e-146 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 379 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 378 / 5e-124 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 367 / 1e-119 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042197 [exp] 947 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 817 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 681 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 679 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 678 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 672 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 652 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 651 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006626 [exp] 640 / 0 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069000 [exp] 746 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 686 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 672 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 660 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 657 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 523 / 4e-180 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 522 / 7e-180 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 512 / 1e-175 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 509 / 1e-174 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 501 / 1e-171 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008619 pacid=23180082 polypeptide=Lus10008619 locus=Lus10008619.g ID=Lus10008619.BGIv1.0 annot-version=v1.0 ATGGGGACGAAAGGGAATTCTGGGGAACTAATTAGAACAAGGGGTTCCCTTTCAATAATCATAGTGGTTGGTTTATGCATTTCCTTCTACCTGTTGGGTT CATGGCAGTTCAGAAAGGGTTGGAAGGGTGATACGGTTACTGAACTGGTCATGAATCAGACAGACTGCACTATCTTCGAGAGATTGACTTATGAGGTAAG TGGTGAAGCTGGCATTGTTAACGATGGCTTTGGATGGGACGATGTGAAAAAGATTCCACCTTGTGATGAAATCTACCTAGATTACACTCCGTGTCATGAT CAAATGAAGGAAAGGCATTGCCCTGTTGATTCTGAGAAGCTGCATTGTCTTATCCCTGCTCCCAAAGGGTATGTAACCCCTTTCGAATGGCCCAAGAGTC GAGACTATGTTGCATACCCGAATGTGGCTTACAAGGCTGACAAAGGTATATATAACTTGGTCGTGTACGAGGGCAATGCGTTAAGGATTCGGGGTCGAGG ATTGAAGTTCCCTCATGGCGCAGAAGCTTATATCGATCGACTATCCTCTGCGATCCCCTTAGACGGTGGGATAATTCGAACTGCTTTGGATATTGGATGT GGGGTGGGTAGTTTGGGTGCATACCTTTTTGAAAAGAATGCCCTAACCATGTCATTTGGACCAAGAGACTCTTATGAAGCACAAGTTCAAATTGCCTTGG AAAGAGGTGTTCCAGCTGTCATTGGTGTTCTTGAAACCATCAAGCTGCCATTTCCTTCTGGAGCCTTTGACATGGCTCATTCTTCTAGCTGCTTGATTCC ATGGGGCGCCAATGATAGAATGTACATGATGGAAGTCGATCGTGTTCTAAGGCCAGGTGGTTACTGGCTGCTTTCTGGTCCTCCAATCAACCGGAGAACA CATTACAGAACATGGAAGCGAACTAAAGTGGATCTCGAAGCAGCACAAATCCGGATTGAAGAAACTACCAGGCTTCTTTGCTGGGAAAAGATTACTGAGT TGGGTGATACAGCTATCTGGCAGAAACCAGTTGACCCTGATTTTTGCACTGAGCAGCAGCAGCCTACCATTTGCGCATCCTCGAATCCCTGGTACAAGAA ACTGGAGCCATGTGTAACTCGTTATAATCGGTCTGAGTGGAAGCCATTTCCTGAAAGACTCAACTCCATCATACCTTCCAGAATATCCAGTGGTTCTATT CAAGGAGTGTCTCCAAAGCAGTACATGGAGGAAAACAGGATCTGGAGGAAGCATGTGAATGGTTCTTATCGGCGGATAAATAAAATCCTAGACACAGGGA GATACCGCAACATTATGGACATGAATGCTGGCATGGGTGGCTTTGCTGCAGCTCTTGAATCACCTAAACTGTGGGTTATGAACGTTATCCCTACAATTGC TCAAGACACCTTGGGCGTTATATATGACCGTGGATTGATAGGCATATACCATGATTGGTGTGAAGCTTTCTCAACGTATCCAAGGAGTTACGACCTCATT CATGCAAATCGAGTATTCAGCTTGTACAAGGTCAAGTGCAGTATGGAAGACATTCTGGTGGAGATGGATAGGATATTGAGGCCTGAAGGTACGGTCATAA TTCGCGACGATGTGGATGTACTTGTGAAGGTGAAGAGGATAGTGCAAGGGATGAGATGGAAGACGAAAATGGTTGATCATGAAGACGGGCCAACGGTTCC GGAGAAGGTGATGTTTGGTGTCAAACAGTACTGGGTTGCAGGAGAAGAGAATCCCAACTAA
AA sequence Show only first row Show all	>Lus10008619 pacid=23180082 polypeptide=Lus10008619 locus=Lus10008619.g ID=Lus10008619.BGIv1.0 annot-version=v1.0 MGTKGNSGELIRTRGSLSIIIVVGLCISFYLLGSWQFRKGWKGDTVTELVMNQTDCTIFERLTYEVSGEAGIVNDGFGWDDVKKIPPCDEIYLDYTPCHD QMKERHCPVDSEKLHCLIPAPKGYVTPFEWPKSRDYVAYPNVAYKADKGIYNLVVYEGNALRIRGRGLKFPHGAEAYIDRLSSAIPLDGGIIRTALDIGC GVGSLGAYLFEKNALTMSFGPRDSYEAQVQIALERGVPAVIGVLETIKLPFPSGAFDMAHSSSCLIPWGANDRMYMMEVDRVLRPGGYWLLSGPPINRRT HYRTWKRTKVDLEAAQIRIEETTRLLCWEKITELGDTAIWQKPVDPDFCTEQQQPTICASSNPWYKKLEPCVTRYNRSEWKPFPERLNSIIPSRISSGSI QGVSPKQYMEENRIWRKHVNGSYRRINKILDTGRYRNIMDMNAGMGGFAAALESPKLWVMNVIPTIAQDTLGVIYDRGLIGIYHDWCEAFSTYPRSYDLI HANRVFSLYKVKCSMEDILVEMDRILRPEGTVIIRDDVDVLVKVKRIVQGMRWKTKMVDHEDGPTVPEKVMFGVKQYWVAGEENPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	0	1
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	1.0	0.8720
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	2.0	0.8704
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	2.4	0.8634
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	4.5	0.8482
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	5.5	0.8482
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	6.7	0.8310
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	7.0	0.8412
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	9.2	0.8321
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	9.8	0.8467
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	10.0	0.8346

Compare expression of checked genes

Lus10008619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.