Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18800 272 / 8e-93 NRP2 NAP1-related protein 2 (.1) AT1G74560 257 / 1e-86 NRP1 NAP1-related protein 1 (.1.2.3) AT2G19480 52 / 6e-08 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 52 / 1e-07 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 49 / 6e-07 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 46 / 8e-06 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023599 [exp] 341 / 8e-120 AT1G18800 334 / 2e-116 NAP1-related protein 2 (.1) Lus10024229 [exp] 339 / 6e-119 AT1G18800 336 / 4e-117 NAP1-related protein 2 (.1) Lus10042106 [exp] 61 / 7e-11 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001235 [exp] 61 / 1e-10 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042097 [exp] 55 / 1e-08 AT4G26110 232 / 5e-72 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001231 [exp] 54 / 2e-08 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) Lus10026197 [exp] 51 / 2e-07 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011956 [exp] 51 / 2e-07 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 50 / 4e-07 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062700 [exp] 311 / 8e-108 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 305 / 1e-105 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1) Potri.017G080700 [exp] 274 / 2e-93 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.004G128701 [exp] 237 / 2e-79 AT1G18800 244 / 1e-81 NAP1-related protein 2 (.1) Potri.006G148600 [exp] 57 / 1e-09 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 50 / 3e-07 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 50 / 4e-07 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 49 / 1e-06 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 46 / 1e-05 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 45 / 2e-05 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10008620 pacid=23180117 polypeptide=Lus10008620 locus=Lus10008620.g ID=Lus10008620.BGIv1.0 annot-version=v1.0 ATGACTGCCGACAAGGGAAAGAAGATGAAGGTGGAGAAAGGCGATGAGGAAAACCACCACATCGATGAAGAGCTTGTTCTCTCCATCGAGAAGCTCCAGG AGATCCAAGACGACCTTGAAAAGATCAATGAAGAGGCAAGTGATAAGGTGTTGGAAGTGGAGCAGAAATACAACGAGATACGTAAACCAGTCTATGATAG GCGAAATGATATCATCAAATCAATCCCTGACTTTTGGTTGACAGCTAACTCGACTAATCCAATGCTTGATAATGTGCAGATTTTAAGTCACCCTGCAATT GGCGATATTCTCAACGAGGAAGACCAAAAGCCTGCTTATGTGATGATGATGCCTTCCTCTTTTCAGAACTTTGAGACCAATCCTTATTTTGAAGATACTA AGCTCACAAAGACATTCACCTTCCTGGATGAAGGAACAACAGAAATCACTGCTACTCCAATCAAGTGGAAGGAAGGCATGAATCTGTGTAATGGTGTTAA TCATGAGAAGAAAGGCAACAAAAGGCCTTTGGCTCCTGAAAGTTTCTTCACCTGGTTTAGCAACACCCAACCAAAGGACATGATGGAGGAAACTCAAGAT GAGATTGCAGAGATCATCAAGGAAGATTTGTGGCCCAACCCTCTCTCCTATTTCAACAATCATCGATAA
AA sequence Show only first row Show all	>Lus10008620 pacid=23180117 polypeptide=Lus10008620 locus=Lus10008620.g ID=Lus10008620.BGIv1.0 annot-version=v1.0 MTADKGKKMKVEKGDEENHHIDEELVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYNEIRKPVYDRRNDIIKSIPDFWLTANSTNPMLDNVQILSHPAI GDILNEEDQKPAYVMMMPSSFQNFETNPYFEDTKLTKTFTFLDEGTTEITATPIKWKEGMNLCNGVNHEKKGNKRPLAPESFFTWFSNTQPKDMMEETQD EIAEIIKEDLWPNPLSYFNNHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	0	1
AT4G13720			Inosine triphosphate pyrophosp...		Lus10023678 [exp]	2.8	0.8864
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	4.0	0.9167
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	10.1	0.8265
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	12.8	0.9081
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	17.5	0.8920
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	18.3	0.8799
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	19.8	0.8978
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	20.0	0.8558
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	20.2	0.8646
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	20.8	0.9014

Compare expression of checked genes

Lus10008620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.