Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47640 100 / 1e-26 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G19860 56 / 1e-09 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 50 / 1e-07 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 47 / 6e-07 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G14410 40 / 0.0002 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024233 [exp] 163 / 3e-51 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10042194 [exp] 140 / 8e-44 AT3G47640 94 / 1e-24 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10041908 [exp] 56 / 1e-09 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028456 [exp] 55 / 2e-09 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10020069 [exp] 46 / 2e-06 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041148 [exp] 45 / 4e-06 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 42 / 4e-05 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 42 / 7e-05 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021876 [exp] 41 / 8e-05 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142700 [exp] 137 / 4e-41 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.003G074400 [exp] 122 / 2e-35 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G129600 [exp] 58 / 1e-10 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 54 / 4e-09 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 53 / 6e-09 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G031000 [exp] 45 / 5e-06 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G072900 [exp] 44 / 5e-06 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 43 / 2e-05 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008622 pacid=23180115 polypeptide=Lus10008622 locus=Lus10008622.g ID=Lus10008622.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCAAACAACGGGAAAGCCTCGGTTTTGGACGAAGCTGCTCGAGTGTTGAAGGATTTGCTTGGACAAATTAACATCCTGAAGAAGGAAAATG CATCTCTGCTTTCTGAATCTCGTTATGTAACTATTGAGAAGAATGAGCTTAAGGAAGAGAACTCCGTCCTCGAAACCCAGATACGAAATATGCGAAGCAA GGTACGAGTAACCACCCTGGATTTGAACATTCCACCACCCGAGTCTCAGCAAGAAGAAACTACAACACCACACTTTCTGGGATGTCGTCCTTCCATAGAT GCCTCGTCGCAGCAGCAGCAGCCACCGGCTGTGTTCGTGAACTCAGATATGCATTACTTATCAGCAATGCAATCATATGTGAGCAAACCACACGCCAGAT ATCCCACCGCAGCTGATTCTTGGCCGTTTTGCAACTCTTAG
AA sequence Show only first row Show all	>Lus10008622 pacid=23180115 polypeptide=Lus10008622 locus=Lus10008622.g ID=Lus10008622.BGIv1.0 annot-version=v1.0 MEPPNNGKASVLDEAARVLKDLLGQINILKKENASLLSESRYVTIEKNELKEENSVLETQIRNMRSKVRVTTLDLNIPPPESQQEETTTPHFLGCRPSID ASSQQQQPPAVFVNSDMHYLSAMQSYVSKPHARYPTAADSWPFCNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	0	1
AT1G06930			unknown protein		Lus10034209 [exp]	6.5	0.8309
AT2G22590			UDP-Glycosyltransferase superf...		Lus10025711 [exp]	6.9	0.8194
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	7.3	0.8212
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027428 [exp]	7.7	0.8397
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	8.2	0.8367
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	8.3	0.7906
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10007509 [exp]	16.6	0.7855
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	19.2	0.8229
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	25.9	0.8085
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	27.0	0.8024

Compare expression of checked genes

Lus10008622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.