Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39850 342 / 8e-122 Ribosomal protein S4 (.1) AT5G15200 342 / 1e-121 Ribosomal protein S4 (.1.2) AT5G15750 47 / 1e-06 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) ATCG00380 41 / 0.0001 ATCG00380.1, RPS4 chloroplast ribosomal protein S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042193 [exp] 383 / 7e-131 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10012839 [exp] 354 / 3e-126 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10030487 [exp] 354 / 3e-126 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10001767 [exp] 49 / 2e-07 AT5G15750 317 / 3e-112 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062300 [exp] 357 / 9e-128 AT5G39850 332 / 1e-117 Ribosomal protein S4 (.1) Potri.016G076500 [exp] 355 / 6e-127 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.016G076800 [exp] 355 / 6e-127 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.006G209700 [exp] 348 / 5e-124 AT5G39850 325 / 6e-115 Ribosomal protein S4 (.1) Potri.007G056100 [exp] 346 / 2e-123 AT5G39850 337 / 1e-119 Ribosomal protein S4 (.1) Potri.011G094500 [exp] 343 / 5e-122 AT5G39850 336 / 3e-119 Ribosomal protein S4 (.1) Potri.006G209801 [exp] 196 / 6e-65 AT5G15200 200 / 7e-67 Ribosomal protein S4 (.1.2) Potri.006G209900 [exp] 142 / 2e-44 AT5G39850 130 / 3e-40 Ribosomal protein S4 (.1) Potri.017G101200 [exp] 52 / 2e-08 AT5G15750 291 / 6e-102 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1) Potri.004G113600 [exp] 50 / 2e-07 AT5G15750 312 / 3e-110 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0492 [flax] [poplar] S4 PF00163 [flax] [poplar] Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008624 pacid=23180076 polypeptide=Lus10008624 locus=Lus10008624.g ID=Lus10008624.BGIv1.0 annot-version=v1.0 ATGGTGCACGTCTCCTTCTACCGCAACTATGGGAAGACATTCAAGAAGCCTCGTCGTCCTTACGAGAAGGAGCGTTTGGATTCTGAGCTGAAGCTAGTGG GAGAGTATGGTCTCCGTGCCAAGAGAGAGCTGTGGAGGGTCCAGTACGCATTGAGCCGTATCCGTAATGCAGCTAGAATGCTTTTGACCTTGGATGAGAA GAACCCGCGTAGGATCTTTGAGGGTGAGGCTCTTCTACGAAGGATGAACCGCTATGGACTCTTGGATGAGTCTCAGAACAAGCTCGATTATGTGCTGGCT CTGACTGTTGAGAACTTCCTTGAGCGCCGGCTGCAGACTCTTGTTTTCAAGTCTGGAATGGCCAAGTCTATCCACCATGCTCGTGTTCTCATCAGGCAGA AACACATCAGGGTCGGAAGGCAGGTGGTGAACATACCGTCATTCATGGTAAGACTGGATTCTCAGAAGCACATCGATTTCTCAATCAGCAGCCCGTTCGG TGGTGGCCGTGCTGGAAGAGTGAAGAGGAAGAACATGGCTGCATCATCCAAGAAGCAAGCCGGCGGTGGTAGCGACGACGAGGGAGCAGAGTAA
AA sequence Show only first row Show all	>Lus10008624 pacid=23180076 polypeptide=Lus10008624 locus=Lus10008624.g ID=Lus10008624.BGIv1.0 annot-version=v1.0 MVHVSFYRNYGKTFKKPRRPYEKERLDSELKLVGEYGLRAKRELWRVQYALSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLA LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRLDSQKHIDFSISSPFGGGRAGRVKRKNMAASSKKQAGGGSDDEGAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	0	1
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	1.4	0.9849
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	1.7	0.9833
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	2.0	0.9836
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	2.8	0.9655
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	2.8	0.9792
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	3.2	0.9764
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	3.5	0.9742
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	3.7	0.9739
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	5.5	0.9626
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	6.0	0.9655

Compare expression of checked genes

Lus10008624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.