Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47670 129 / 2e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 99 / 1e-23 ATPME1 pectin methylesterase 1 (.1) AT3G14300 83 / 6e-18 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT2G01610 75 / 4e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 74 / 7e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23205 73 / 2e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 72 / 4e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G70720 69 / 6e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 66 / 6e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 63 / 7e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042193 [exp] 395 / 5e-135 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10037457 [exp] 104 / 2e-26 AT1G53840 234 / 1e-72 pectin methylesterase 1 (.1) Lus10003934 [exp] 105 / 8e-26 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10031711 [exp] 81 / 1e-18 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038645 [exp] 81 / 2e-18 AT2G01610 212 / 2e-69 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 77 / 4e-17 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 77 / 4e-17 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037458 [exp] 70 / 1e-13 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10038915 [exp] 66 / 5e-13 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123500 [exp] 144 / 2e-42 AT3G47670 141 / 8e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G108200 [exp] 140 / 5e-41 AT3G47670 122 / 1e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G072700 [exp] 108 / 6e-27 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 101 / 2e-24 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.015G128200 [exp] 77 / 5e-17 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 76 / 9e-17 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 75 / 3e-16 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 75 / 3e-16 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134700 [exp] 76 / 8e-16 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 74 / 4e-15 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10008625 pacid=23180094 polypeptide=Lus10008625 locus=Lus10008625.g ID=Lus10008625.BGIv1.0 annot-version=v1.0 ATGGAATCAATCAACTTCGCCAAGGGCTACGGCAGAGTAAGCACATCAACTCATCTTCAACCCCAAGATCAACCTCCTCATCGCCCAACCAAATCCATCA GAAAACCCCTAACCGCAGTAGCCTCCGCCGTCATCATCCTCCTCATCGTGCTCCTCGCCGTCCACAACCACAACAGCAGCAACGAATCCCTAAAGAAGCC GGAACAACATCTCCCTCCCTCCGCCTCCGTCGCCGATTCAATCAGATTCGTCTGTAACGTCACCCGCTATCCAAACCCCTGCTTCACCGCCATATCCTCA GCTATGGACTCGAGCTCCGCTTCCGATCCGGAAGCGATCCTTAAAGTCTCGATCCGAGTCTCCCTCACTAGGATCTCGGATCTGGCTTCCTTGTTTCGGA ACTCTTCCTCCTCGAAGTCGCCGGCTGTGGACGACTGCGTTGACCAGCTGGATGAGGCGAAGAGCAATCTGAAGCAGTCGATTGCGGCTATGGAGGAGAA GGCGTTGACGGAGGAGAAGATCGCCGACTTGAAGACGTGGATAAGCGCAGCGATGACCGACGAGGAGACTTGCCGGGACGGGATGGAGGAAATGGGGGCG ACGGTGGCGGAAGGAATGAAGGCGGAGATGGAGGATTGTACGGAGATGATGAGTAATAGCTTGGCGATCCTCGCTAATTTGCCTTCATTGCTGCAGATTT CCCGCCTCCGATTCCATTAG
AA sequence Show only first row Show all	>Lus10008625 pacid=23180094 polypeptide=Lus10008625 locus=Lus10008625.g ID=Lus10008625.BGIv1.0 annot-version=v1.0 MESINFAKGYGRVSTSTHLQPQDQPPHRPTKSIRKPLTAVASAVIILLIVLLAVHNHNSSNESLKKPEQHLPPSASVADSIRFVCNVTRYPNPCFTAISS AMDSSSASDPEAILKVSIRVSLTRISDLASLFRNSSSSKSPAVDDCVDQLDEAKSNLKQSIAAMEEKALTEEKIADLKTWISAAMTDEETCRDGMEEMGA TVAEGMKAEMEDCTEMMSNSLAILANLPSLLQISRLRFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	2.8	0.9035
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10010354 [exp]	4.2	0.8701
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	7.1	0.8992
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	7.4	0.8822
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	9.4	0.8972
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10014631 [exp]	9.5	0.8918
AT1G33350			Pentatricopeptide repeat (PPR)...		Lus10027311 [exp]	9.7	0.8474
AT2G23290	MYB	ATMYB70	myb domain protein 70 (.1)		Lus10021762 [exp]	10.1	0.8332
AT5G25940			early nodulin-related (.1)		Lus10002236 [exp]	19.2	0.8825
AT4G25030			unknown protein		Lus10036513 [exp]	20.2	0.8933

Compare expression of checked genes

Lus10008625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.