Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28857 67 / 9e-16 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G39860 63 / 2e-14 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G26945 61 / 1e-13 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G47710 61 / 2e-13 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) AT5G15160 56 / 1e-11 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1) AT1G74500 54 / 8e-11 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012842 [exp] 66 / 2e-15 AT3G28857 103 / 3e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024241 [exp] 63 / 2e-14 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10023610 [exp] 62 / 7e-14 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030490 [exp] 59 / 2e-12 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10036732 [exp] 55 / 4e-11 AT1G26945 115 / 6e-35 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10037198 [exp] 55 / 5e-11 AT1G26945 114 / 1e-34 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081300 [exp] 67 / 4e-16 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.012G069500 [exp] 64 / 9e-15 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.004G128400 [exp] 64 / 1e-14 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.015G063300 [exp] 62 / 6e-14 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008626 pacid=23180086 polypeptide=Lus10008626 locus=Lus10008626.g ID=Lus10008626.BGIv1.0 annot-version=v1.0 ATGTCTGCACGTAGTAGAAGATCATCATCATCATCAAGAGCTCAAAACCTCTCTGAAGATGATATCATAATGGATCTCACCTTGAAACTACGAGCTCTCC TCCCTCACCTTAACCAAAGGCATCCCTCCAGGGGGCAGGCATTGAAGATACTGAAGGAAACATGCAGCTACATAAGGAAGCTAGAGAGGGAGGTGAATGA ACTGAGTGGAAGGCTGTCTGCATTGTTGGACGCCGTCGATTCTTCCAACAATCATCGGGATTTCGATGTAGATTCCATCAGAACATTACTACAACAACTA TGA
AA sequence Show only first row Show all	>Lus10008626 pacid=23180086 polypeptide=Lus10008626 locus=Lus10008626.g ID=Lus10008626.BGIv1.0 annot-version=v1.0 MSARSRRSSSSSRAQNLSEDDIIMDLTLKLRALLPHLNQRHPSRGQALKILKETCSYIRKLEREVNELSGRLSALLDAVDSSNNHRDFDVDSIRTLLQQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10008626 [exp]	0	1
					Lus10029509 [exp]	1.0	0.8692
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032020 [exp]	1.4	0.8538
AT5G24080			Protein kinase superfamily pro...		Lus10027559 [exp]	11.0	0.7451
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	13.0	0.8025
AT5G07330			unknown protein		Lus10018040 [exp]	13.4	0.8139
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	19.4	0.7940
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	20.8	0.6113
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035189 [exp]	21.9	0.7355
					Lus10003555 [exp]	22.2	0.6295
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	23.0	0.7821

Compare expression of checked genes

Lus10008626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.