Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 476 / 3e-164 Kin2, APK2B protein kinase 2B (.1.2) AT1G69790 463 / 6e-160 Protein kinase superfamily protein (.1) AT1G26970 462 / 2e-159 Protein kinase superfamily protein (.1) AT1G14370 455 / 3e-156 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G74490 431 / 3e-147 Protein kinase superfamily protein (.1) AT1G07570 424 / 3e-144 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 422 / 2e-143 APK1B protein kinase 1B (.1.2.3) AT5G02290 421 / 2e-143 NAK Protein kinase superfamily protein (.1.2) AT3G01300 387 / 1e-128 Protein kinase superfamily protein (.1) AT3G28690 384 / 1e-128 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042192 [exp] 754 / 0 AT2G02800 479 / 3e-168 protein kinase 2B (.1.2) Lus10012850 [exp] 494 / 1e-171 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10030496 [exp] 470 / 8e-163 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10023794 [exp] 422 / 4e-144 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 422 / 1e-143 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 421 / 3e-143 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040806 [exp] 414 / 3e-140 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10016537 [exp] 411 / 3e-139 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10000954 [exp] 405 / 4e-137 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093700 [exp] 513 / 5e-179 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 501 / 2e-174 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.001G240400 [exp] 434 / 3e-148 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 432 / 2e-147 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 414 / 2e-140 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 412 / 9e-140 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 411 / 3e-139 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.007G062700 [exp] 385 / 6e-129 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G129000 [exp] 385 / 2e-128 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 384 / 2e-128 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05495 [flax] [poplar] zf-CHY CHY zinc finger CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008627 pacid=23180065 polypeptide=Lus10008627 locus=Lus10008627.g ID=Lus10008627.BGIv1.0 annot-version=v1.0 ATGTCGTGCTTCAATTTCAAGAAGGAGAAGCGCCAAATACACAAATGCATAGCAACGCCTCATGGGAAGAATCTATTAGAAAACAATCACAAATCTTTCA GCTCTTTCCAGGGTTCTGCTTCTCCAGGGCACTCAGATGTTCCGGAGAGAAGATGGCAGTCCTCGTCGAATCTGGATTCGAAGGTGGTTCCGAACAGCAA TCAAAAGGATAGCAGCGTTCCGAGAACGGAGGGGGATATACTTTTATCTCCAAACTTGAAAGCCTTCGCATTTGCTGAGCTAGTGGAAGCCACTAGAGAC TTCAACCCTGACACTGAGATTGGAGAAGGTGGGTTTGGGTTTGTGTACAAAGGCTGGATTGATGAACAAACCCGTGCACCTGCTTCTTGGGGCAAAACCG GAAAGGTTGTTGCGATCAAGAAGCTCAAACCGGACGGTTTTCAGGGTCATAAAGAGTGGCTGTCTGAAGTGAACTATCTTGGCAGACTCCATCACCCAAA TCTCGTCAAACTTATCGGTTACTGCTTAGACGGAGACAATCGCCTCCTGGTTTATGATTATATGCCCAAAGGAAGTCTGGAGGATCATCTGTTTGAAAGT AAAGGTGAGCCTCTTCCTTGGAAAACAAGGATGAAAGTCGCAATGGGTGCTGCTCGTGGCCTTTCCTTCCTGCACGACTCCGAGCAGCAAGTTATCTACC GCGATTTCAAGGCCTCCAACATTCTTTTAGATTCAGACTTCAATCCAAGGCTTTCAGACTTTGGCTTAGCAAAGGCGGGTCCCACAGGAGGTCGAACTCA TGTTTCGACTCAAGTTCTGGGCACTCGAGGCTACGCTGCGCCTGAGTACATAGCTACAGGTCGCCTAACCACAAAATGTGACGTGTATAGCTTCGGAGTG GTGTTGATGGAGCTTCTGACGGGGCGCCAAGTTGTGGACAAGACCAAAGTAGGGGTGGAGCAGAACCTAATAGAATGGGTAAGACCTTACTTGAACGACA AGCGAAAGCTGTTTCGAGTTATGGACACCAAGCTTCAAGGGCAGTACCCTCAGAAAGGAGCCTTCATGGTCGCATTCCTCGCCTTGCACTGCCTTGGAGA CGCCAAAGTCCGGCCCACCATGGCCGAGGTCGTGACCATACTCGAGAAAGTGATGTCTGCAAAACATACAAAGAGCCCGAACCCATCACAGAGTAATGCA TCAACCATTATCCGCTTTTCTTTCAGTCGGTGGCAACAGATTTATCATACAGATGAATTCCCCACAAGTAATGAGAAAATACTCCAAGGTCAACATCCAT CATACCAAGACCCAATAAAGCTAACCTTGGGTTGTAAACACTACAAGAGGAACTGCAAACTTCTTGCTGAATGTTGCAATCAACTTTATACATGCCTACG GTGCCATGATGAGTCAGCGGATCATTCAGCAGACAGAAGGACCTTCACAAAGATGATGTGCATGAATTGTCTGGCCATCCAACCTATTCAGCCGACATGT GCAATTATCTCCTGCAACAATTTTTCTATGGCTAAGTACTATTGCCGAATCTGCAAATTGTTCGACGATGAAGAGGAAATCTACCACTGCCCTTTCTGTA ACATCTGCCGTGTGGGAAAGGGTTTAGGAATAGACTACTTCCATTGCATGAACTGTAATGGCTGCATGTCCAAGACTGTTAGGAATAAGAGGATTATACT ACAAGTGATGGACAACCGCAGCAGTAACTGGACGGGCCGCAACAAATGGAAAACGGCAGCGGAGAACAAAACTCCGACGATGGTGATAATGGAAATGATG ATGTACGCATTGGATCTGATTTGA
AA sequence Show only first row Show all	>Lus10008627 pacid=23180065 polypeptide=Lus10008627 locus=Lus10008627.g ID=Lus10008627.BGIv1.0 annot-version=v1.0 MSCFNFKKEKRQIHKCIATPHGKNLLENNHKSFSSFQGSASPGHSDVPERRWQSSSNLDSKVVPNSNQKDSSVPRTEGDILLSPNLKAFAFAELVEATRD FNPDTEIGEGGFGFVYKGWIDEQTRAPASWGKTGKVVAIKKLKPDGFQGHKEWLSEVNYLGRLHHPNLVKLIGYCLDGDNRLLVYDYMPKGSLEDHLFES KGEPLPWKTRMKVAMGAARGLSFLHDSEQQVIYRDFKASNILLDSDFNPRLSDFGLAKAGPTGGRTHVSTQVLGTRGYAAPEYIATGRLTTKCDVYSFGV VLMELLTGRQVVDKTKVGVEQNLIEWVRPYLNDKRKLFRVMDTKLQGQYPQKGAFMVAFLALHCLGDAKVRPTMAEVVTILEKVMSAKHTKSPNPSQSNA STIIRFSFSRWQQIYHTDEFPTSNEKILQGQHPSYQDPIKLTLGCKHYKRNCKLLAECCNQLYTCLRCHDESADHSADRRTFTKMMCMNCLAIQPIQPTC AIISCNNFSMAKYYCRICKLFDDEEEIYHCPFCNICRVGKGLGIDYFHCMNCNGCMSKTVRNKRIILQVMDNRSSNWTGRNKWKTAAENKTPTMVIMEMM MYALDLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	1.4	0.9568
AT1G23965			unknown protein		Lus10030844 [exp]	3.0	0.9354
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	4.9	0.9269
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	6.2	0.9410
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	6.5	0.9143
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	12.7	0.8939
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	13.9	0.9110
AT5G23160			unknown protein		Lus10013437 [exp]	14.8	0.9060
AT4G02630			Protein kinase superfamily pro...		Lus10012664 [exp]	15.0	0.8706
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	17.2	0.8870

Compare expression of checked genes

Lus10008627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.