Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74770 1009 / 0 zinc ion binding (.1) AT1G18910 998 / 0 zinc ion binding;zinc ion binding (.1) AT3G18290 685 / 0 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT3G62970 195 / 2e-55 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G22920 191 / 5e-54 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 174 / 6e-48 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G18650 168 / 2e-46 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT2G40830 49 / 1e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 43 / 0.001 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042189 [exp] 1778 / 0 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042190 [exp] 920 / 0 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10005111 [exp] 404 / 3e-120 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 402 / 2e-119 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042188 [exp] 311 / 3e-98 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 287 / 5e-84 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10012811 [exp] 181 / 2e-50 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 166 / 9e-46 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 105 / 6e-24 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066600 [exp] 1269 / 0 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.012G055100 [exp] 451 / 2e-137 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 409 / 6e-122 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 407 / 2e-121 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G205400 [exp] 182 / 3e-51 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 181 / 2e-50 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.009G005700 [exp] 180 / 3e-50 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 179 / 3e-50 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G121801 [exp] 170 / 4e-47 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G032100 [exp] 47 / 6e-05 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [flax] [poplar] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10008628 pacid=23180071 polypeptide=Lus10008628 locus=Lus10008628.g ID=Lus10008628.BGIv1.0 annot-version=v1.0 ATGTGCGGCTCCGGCGGCGGCGACGGCGACGTCGTCGATGATGGCTCGATCAAATCTCCTATTGACGACCACGAAAACGAGGAAAATCGAGAAGAAGAAG AAGGCGACGAAGATGAAGTGAACTACGAGGCGGAGTACGAGGTCGAAGGGGAGCTGTTCTCCGGTGTGCGTTTGGCTGATGCTCCTATACTATTCCTCCT CTGTTTCCATAGGGCGTTCCGTCGGGAACTGGCGGAGCTGTGTCGGATTGCTCTTGTGGCTTCCGAGAGTGGAGGAGGAGGAAGCGCGATTGATGAGCTT CGCTGCAGATTCGAGTTCCTTAAACTTGCTTATGACTATCACTCTGCCGCTGAAGACGAGGTTATCTTTCTAGCGTTAGACGTCCACGTTAAGAATGTTG TCTGTGCATATTCACTAGAGCACAAAAGCATAGATGATGCATTTGCCACGGTTTCCCGTTGCTTGAAAGTGTTGATGGAGGAAAAACAAGAAACTAGTTT TGAGCCATTTCAAGAACTTGTATCTTGCCTCAGCATTATCCATTCCTCCATATGCCACCATATGCTAAAAGAAGAAAAACAGGTTTTTCCTTTACTCGTG GAGCGGTTCTCTCCGAAAGAACAAGCTTCACTTGTGTGGCAATTCCTTTGCAGCATACCAGTAATTTTGTTGGAGGATTTCCTGCCATGGATGATCTCTC TTTCTCCTGAAAACCAAGATGATGTTGCACTGTGCATTAAAGAAATTGTACCTGATGGACCACTCCAAGAGGTAATAATTTCTTGGCTCCGGAGACCCGC TCAATTCCCATCTAGGGATTTGACGAACACAGCTGAACGGGGACATATGCCACACCTGCTCTTTTCTGCTAGGTGTTCTGAAGAAAATTGGCAATCGAGG ACAACAGATTCTGTCCTTGCCAAAAAGGGGCACATTGTTCATGACTGTTTCCATCTCTGGCATGGTGTGATTATAAAATCATTATGGGAAATTCTTGAAG AATCATACCAAATAAGATCAGGCAGTTTGTTAAATGTAGATCCAACCTTATTGAGGCTGAAGTTTCTTGCTGATGTATTTACCTTCTACAGCAATGCATT GAAGAAATTCTTTGATCAGATGTTAAATAGACTGGCCAGTGACCACTTCACTGGCTTATATGCTGACCAGTCCCAGGCTGAAAGTCACCTGGAGAGATTA CAGCAGTTGCTCCATGATAATGCTCAGAATATTTTACCTGTGCATGAGTTTGTGGACAAGCTTTGCGAGGGAATGGAGCCCTTTGTCGTGGAAGTCGGAA AACAATTCAAATTTCTAGAAGCAAAGGTACTTTCCCTTTTAATCGATAACTGTGGCCAAGAAATGCAGTTAGAGCTCTTTTTGTACATGAGCTTTGGTAT GATGCCTCTAGGATTACTGAAGTTTGTAATCACTTGGTTCGCAGCCTGCTTGTCCAAACATGAGTTGGGACTCATCCTTCAAGGGTTGAAACAAGATGAA AGTTTGGCCAGTAAATCTTTTCTGTCCCTCTTGCATGAGTGGTTGCTCATTGGTTATTCTGGAAAAATCTCTGTCGATGATTTTGGAAAGGATTTGCAGA GAATGACTAAATCTTCATTTCTGATTGAAAGATCCAAGGAGGATGTTAAATTCTCTTCCTTACCCTTGAACTTGAAACCTTATGAAGCATCTCCCCATTT TAAAGCAGAACCAGTTCCCCTTTATGAGAACAAATTCCTTTCTCCATCTTCTTTGTCCTTTGGTTTTGACAAAGCTAAGAGTTACCAGACATCTTATTCT AGAGAAATAAACCTACATGTGTGTTGTCCTCAAACGATAAAGCTAAGGAACTCTGTTCCTAAAATACCTGGTGTGGAGAGCTCTTCTGCTTCCACTATGG ATGAGCCAATACCTTTGGATTTCATGCTTTTCTTCAATAAGGCTCTTAAGAAGGATTTGGAGAACATTGTCCTGTATTCAGCTCGATTGGCTGAGAACTT TGGGTTTCTCAAAGAATTCTGCCAACACTTCAATCTATTGCGGCACCAATATAAGTTCCACAGTAATGCCGAGGATGAATGGATATTTCCGTTACTTGAG GCTAAGGGAAAAGCTGAGAATATTAGTCACTCCTACACAATTGATCATCAGCTTGAAGTCGAGAATTTCCAACAAATTTCCATCATTCTTGAAGAGATGG TTGGCTTGCAGATGTCAGTCTCTATTGGCACTCATAAGCAGGCTCGGAGAATTATTAGGTGCAAGCATCTCTGTCTGAAACTCCAGCGCAGGTGCAAATC TATTCAAAAACTACTCTCTGATCATATTCATCATGAAGAAATTGAACTTTGGCCAGTAATCAAGCAATGCTTGACAATCCAAGAGCAGGAAAAGGTTGTG GCAAGCATATTGGGGAGGACTAGAGCAGAAACATTACAAGTCATGATACCATGGTTGATTGGCTCTCTAAAACCAGAAGAACAGCTTACAGTTATGTCCT TATGGCGTAAGGTCACAAAGGACACAAACTTCAGTGATTGGTTAGGAGAATGGTGGGAAGTGTGTGATAAATCTTCTATCTCTGAGGAGTTTTCTTCATG TGATACAGACTCGCTGGAGACTGTCTCCAGATATTTGTCTAGTGAATCCCCTGATCAACAAGATGGCTTCCTCAACAACATAAGCATCAATATGCCACAG AAAGATTGCAATAGTGCTAACATCGTGGGAGATAGTGCATCCAAAGATAATACGAAAACTGCTGCTGTGGATGAGGAAAATGAGTGTCTAGACTGCATAA AGATTCTCAATCAAGGTGATAAAAAGACATGCAATGAAGTAGGGGAAATCACAGATGAGAAGGCAAATAAAGCTCAACCTTTCCAAGAAACTCTAAAATC CGTTGATCATGAGCGCCTTTTATCAATTGGTCAAGAAGACTTCGAAGCAGCATTAGGAAGAATTTCTCACGACTCCTCTCTAGATCTTCAGAAGAAATCA CGTCTAATGCAGAACCTGCACACGAGTCGTTGGCTTATTCAGAAACAGATGTATCATACTGATGAAATTCCCACGACTAATGAGAAAGTACTTCAGGGTC AGCATCCATCATACCAAGACCCTAAAAAGTCAACCCTGGGTTGTAAACACTACAAGAGGAGATGCAAACTTTTTGCTGAATGTTGCAATCAACTTTATAC ATGCCTACGTTGCCATGATGAGTCAGCTGATCACACTGCAGACAGAAGGGATATTACAAAGATGATGTGCATGAATTGTTTAACTATCCAATCTATACAG CAGACATGTGCAACCATCTCCTGCAACAATTTGTCGATGGCAAAATACTATTGCCAAATATGCAAATTGTTTGACGATGGAAGGGAAATCTACCACTGCC CTTTCTGTAACATCTGCCGTGTTGGAAAGGGTTTAGGGATTGACTACTTCCATTGCATGAAGTGCAATGCCTGCATGTCCAAGTCTTTGTCCAAGCATAC ATGCAGAGAGAAATGCTTCGACGATAACTGCCCCATTTGCCGGGAATCCATCTTCACTTCCAGCATACCAGTGAAAGCTCTCCCTTGTGGTCATCTGATG CACTCCCCATGTTTTCAGGACTACACTTGCAATCATTATATCTGCCCGATCTGTAGCAAGTCACTTGGCGACATGAAGGTGTACTTTAAGATGCTGGATG CCCTTTTGGCTGAAGAGAGAACTCCAGATGAATACGCAAGCCAAACTCAGGCCATCCTTTGCAATGACTGTGAGGAGAAAGGATCTGCACGTTTCCACTG GTTTTATCACAAATGTTCGTATTGTGGGTCCTACAACACAAGACGTATATAA
AA sequence Show only first row Show all	>Lus10008628 pacid=23180071 polypeptide=Lus10008628 locus=Lus10008628.g ID=Lus10008628.BGIv1.0 annot-version=v1.0 MCGSGGGDGDVVDDGSIKSPIDDHENEENREEEEGDEDEVNYEAEYEVEGELFSGVRLADAPILFLLCFHRAFRRELAELCRIALVASESGGGGSAIDEL RCRFEFLKLAYDYHSAAEDEVIFLALDVHVKNVVCAYSLEHKSIDDAFATVSRCLKVLMEEKQETSFEPFQELVSCLSIIHSSICHHMLKEEKQVFPLLV ERFSPKEQASLVWQFLCSIPVILLEDFLPWMISLSPENQDDVALCIKEIVPDGPLQEVIISWLRRPAQFPSRDLTNTAERGHMPHLLFSARCSEENWQSR TTDSVLAKKGHIVHDCFHLWHGVIIKSLWEILEESYQIRSGSLLNVDPTLLRLKFLADVFTFYSNALKKFFDQMLNRLASDHFTGLYADQSQAESHLERL QQLLHDNAQNILPVHEFVDKLCEGMEPFVVEVGKQFKFLEAKVLSLLIDNCGQEMQLELFLYMSFGMMPLGLLKFVITWFAACLSKHELGLILQGLKQDE SLASKSFLSLLHEWLLIGYSGKISVDDFGKDLQRMTKSSFLIERSKEDVKFSSLPLNLKPYEASPHFKAEPVPLYENKFLSPSSLSFGFDKAKSYQTSYS REINLHVCCPQTIKLRNSVPKIPGVESSSASTMDEPIPLDFMLFFNKALKKDLENIVLYSARLAENFGFLKEFCQHFNLLRHQYKFHSNAEDEWIFPLLE AKGKAENISHSYTIDHQLEVENFQQISIILEEMVGLQMSVSIGTHKQARRIIRCKHLCLKLQRRCKSIQKLLSDHIHHEEIELWPVIKQCLTIQEQEKVV ASILGRTRAETLQVMIPWLIGSLKPEEQLTVMSLWRKVTKDTNFSDWLGEWWEVCDKSSISEEFSSCDTDSLETVSRYLSSESPDQQDGFLNNISINMPQ KDCNSANIVGDSASKDNTKTAAVDEENECLDCIKILNQGDKKTCNEVGEITDEKANKAQPFQETLKSVDHERLLSIGQEDFEAALGRISHDSSLDLQKKS RLMQNLHTSRWLIQKQMYHTDEIPTTNEKVLQGQHPSYQDPKKSTLGCKHYKRRCKLFAECCNQLYTCLRCHDESADHTADRRDITKMMCMNCLTIQSIQ QTCATISCNNLSMAKYYCQICKLFDDGREIYHCPFCNICRVGKGLGIDYFHCMKCNACMSKSLSKHTCREKCFDDNCPICRESIFTSSIPVKALPCGHLM HSPCFQDYTCNHYICPICSKSLGDMKVYFKMLDALLAEERTPDEYASQTQAILCNDCEEKGSARFHWFYHKCSYCGSYNTRRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	0	1
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	14.3	0.5349
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	19.5	0.5409
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	33.2	0.5223
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016245 [exp]	40.3	0.4507
AT4G11510		RALFL28	ralf-like 28 (.1)		Lus10002261 [exp]	47.3	0.5083
AT4G11510		RALFL28	ralf-like 28 (.1)		Lus10002260 [exp]	48.2	0.5152
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	53.8	0.4823
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	64.5	0.5038
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10012549 [exp]	69.0	0.4789
AT1G27340			Galactose oxidase/kelch repeat...		Lus10015775 [exp]	69.3	0.4906

Compare expression of checked genes

Lus10008628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.