Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47890 1311 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT3G47910 1291 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2) AT1G65120 140 / 3e-33 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2) AT1G65160 130 / 5e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G27630 135 / 1e-31 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT2G27650 132 / 9e-31 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT1G65200 132 / 1e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT1G65130 130 / 5e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT1G65110 128 / 2e-29 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT5G51530 127 / 4e-29 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042186 [exp] 2560 / 0 AT3G47890 1654 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066500 [exp] 1526 / 0 AT3G47890 1634 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) Potri.012G071900 [exp] 1505 / 0 AT3G47890 1631 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) Potri.017G089250 [exp] 312 / 6e-86 AT3G47890 317 / 2e-87 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04780 [flax] [poplar] DUF629 Protein of unknown function (DUF629) CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF04781 [flax] [poplar] DUF627 Protein of unknown function (DUF627)
Representative CDS sequence Show only first row Show all	>Lus10008630 pacid=23180096 polypeptide=Lus10008630 locus=Lus10008630.g ID=Lus10008630.BGIv1.0 annot-version=v1.0 ATGGGGCATAAGAAGCGCGCAGTCGCTCCACGCTCCAAGCACCAGTCGCCGCACTCTGCTGCTTCAGCGGCGGTGGGAGATGCTGCAGCTGGGGTGGGAA ATGAAGCCGAGCTTTGTCCCGATCCCAACAACAATCTGTCGATTGTGAAGATCGAACCGGAACTCGACTTCCCCGGCTCTTCTTCTTACAGCGCAGTCAA GCTGGAATGCGAGCGAGCCCTAACAGCGCTCCGGCGAGGGAACCACACCAAGGCGCTGCGGCTCATGAAGGAGTCGTGTTCTCGCCACGGTGACTATTCC CCTCATTCCGCTCTGATTTATCGTGTCCAAGGGACTGTTTGCGTGAAGGTGGCATCGATAATCGACGATCCCAACGCCAAACAGCGGCACCTGAGGAACG CCGTGGATTCGGCGCGTAAGGCTGTGGCGCTGTCGCAAAACTCCATTGAGTTGATTCCGATTCGACGTGCTACTGAAGACCCCATGGAGGCTAGGTTGTC ACAGACGAGGCGGCCTAACGAAATTAAGAAAGCTACCAAGACTCCAGAAGAGCGAAGGAAAGAGATTGAGGTCAGAGTTGCTGCTGCCAGACTCTTGCAG CAGAAATCGGATACTGATTTGGGGCGCAATGATGGGGAGAGGAATAATAATGACAAGGGAGTTGAGTTGTCCTCTGGAAATGAAAAGAGAGGAGAAAGGA GAAAGTATGGGAGCAATGCAAAGAGGACAGGTACTAATACGGAAAGGAAGGACTGGGTTCGATCATATTGGAACTCAATGAAGACAGACATGAAAAAGGA GTTGCTCAAAATTAGGGTCAGCGATTTGAAGGGCTATTTTGGCTTGTCAAAGGATGGATTGGCGACCGAGGTCCTCAACGACGCACTGACATCTGAAGAG GGGGAAACCGGATGGAGATTTTGGGTTTGTTGCAGATGCTCTGAGAAGTTCCCTACTCCGGAGAAACATATACAGCATGTTGTGCAAGAGCACATGGGTA ATCTTGATCCCAAAATGCAAGCAGTCTTGCCTCAAAATGTTGAAAGTAGTTGGATTGAGATGATCATGAATTATTCTTGGAAACCATTGGATGTTTCTTC TGCAGCTAAGATGCTTGGGCATCAACGGAAATTCCAGGATTCAGAGCCTGACTGTTCCCTTGAAAATCATGACGGTGATTGTGAGGATTACAAGGATGCG TGTGATTCTTCTCCAGAGAAGGAAAACGTAGGAGATGGATGCAGTGAAAGCAGTAATGGGGGTAAGGATACTGATGGAGGAGCAGATTCTGAGTGTAGAG AATGCAATGTCAAAGAAGGATCTCTGGCATATTCTATTGAAAGCTGGCCATCATCAGATGACTCTGAGAGGGCAAGGCTTCTTGAGAGAATTCATGATGT ATTTGAATCTCTTATTAGTCATAAGTATCTTGCGACAAGCCATATTACCAAGGTGCTACAAATTAGTAAGGACGAATTACGGACTCTTGCTTCTGGTTCT CAGCTTCTGAACCATGGTTTGGACGAAACACCTTTCTTGATTTGCTTTTTGGAAGCACCCCAACTGAGAAGGATCCTTAAGTTCCTGCAGGATCTAGCTC ATGCTTGTGGTTTGAGCAGATATTCAGAAAAAGGGAATGCATTGGATAATAGAAATAATGGCGTTCATGTATCTGAGTACAAAGACGATCTTGTTCTTAA TGGTGACAGATCATATCTCTACTTGGACGAGAGGCTATTGGCATCTGAATATGCTCGTGAGAATGATACCAGTCTATGTTGGGGTAATCCTGGAAAAGGG GTTCCATCTGATACCGATTCATTATTATCATGGATATTTTCAGGTCCCTCTAGCAATGATCAGTTGCAGTTATGGATGCGAACAAAGGAAGAGAAAATGC AACAAGGAATGGACATTGTCCAGAATCTTGAGAAGGAGTTTTACCACTTGCAAAGTCTTTGTGAGAGAAAATGTGAGCATCTAAGTTATGAGGAAGCTTT GCAGACTGTGGAGACTTTTTGTCGTGAAGAAGTTAAGAACAGAGATGATATGACTCTGTCTGAATTAGAAAGCTGTGATTCTATTCTTAGAAGGAGGAGG GACGAGCTCGCAAATTGTGTGAATGACGATGTTATGTTAAGTGGTAGAAGTTCTGAATTAGATGTTATATCAAGTGTCCTAAAAGAGGCAGAAACTCTGA ATGTGAATCATTTTGGATATGAAGATAATTATGGTGCTATGGCTTCTCAGTTATGCGACTTGGAATCTGGTGAAAATAGTGATGGCAGAGGCAACGATTA TATCCATCAAATGGATTCTTTTATTGAAGTTGCTATCGAGAAGCAGAAAGATCAGTTATCTGTTGAGCTAAGCAAAATAGATGTCAGGATCATGAGAATT GTGTCAGGGATGCAGCATTTGGAACTCAAACTCGAGCCTGTTTCTGCACGTGACTATCAGTCGATATTGCTGCCTTTAGTGAAGTCTTACTTGAGGGCTC ATTTGGAGGATCTAGCTGAGAAGGATGCCACAGAAAAGTCTGATGCAGCCAGAGAAGCATTTTTAGCGGAGCTTGCACTAGATTCTAAAAAAGCTGCCCA CGGAGGTAGTGATCCTTCAAGAAACTCGCAAGAGAAAAAGGACAAGAAAAGGAATAAAGAGTTAAAGAAGACAAAGGACTATAAGGGTGGTTCTGGCAAT GAGCAGGCACTGCTTCATGATGAAACAACTGAACTTGAAATCTTTGCACTCTCATCGGAGGTCGATCTAGAAGCTGAGATTCTTCCCTCTTCAAATGGTG TGGACTTGAGAAAGCAGGAGGAAGAATTTCGTCGCAAAATTGAGCTCGAGGAGGAGGAAAGAAAGCTGGAAGAGACTCTAGAGTTCCAAAGGAGAATTGA GAATGAGGCCAAAGTGAAGCACTTGGCTGAGCAACAACATAAACGAGCTTATAAGACATTTCCAGATAACTTTACTGAGGGACAACAGGATGCCTCCTTG GAGCAAGCAGCTAATAAGGAGAATGATTCCTCAATAATGGGACCATTAGCAAAGACAAATGGGCTAACCAACAAATTTGGAGCTGGACGATCGACTACTG GAAATGCTTCTGAGTTGCTGATTGAATCTATTCGTTTGCCTGGTTCTGAAGCTCTTGATAAACTTAACCAAGGTCTTCCTAATGGAGTTACCATGGAGAA TGGCATTCTTTCTTCTGACAGAAGGACAGGAAGGAGAGCTAGGCGACAGAAAAGCTCTTCCAGATCTGCTGATAGCAATTGCCAACTTATATCAGCTGAA AAAGAAAATACTGAAGCTGTGACTGTTAATCTTGGTTCTGAAGATACGGGGTCCAAGACATTGAGACAATTGCGAGTAGAGGAAGATGACGAGGAACGAT TCCAGGAAGATCTTAAAAAGGCTGTACGGCAAAGTCTGGATACATTCCAAGGTCATGAGAGCATCCCATCCATTCCACGCTTGAGAATGCGACCTAAGAC TACTTTGGAGACAAAGAGTTCAGGGAGCTCCCAACATGAGGTTACAGTCGAACATGAAAATGGAACTGATGTGTTTGGTAGTGGTCTTAAGAATGAAGTC GGTGAATACAACTGCTTTCTGAACGTAATTATACAGTCCTTATGGCATTTACGGCGGTTTCGTAGCGAGTTCATGAAAAGATCAACATTGGAGCATGTTC ATGTTGGAGACCCATGTGTTGTTTGTGCTTTATATGATATTCTTTCCGCTCTAAGCCTTGCGTCCATTGATGTCCAAAGAGAAGCTGTTGCTCCTACCTC TCTGAGGCTTGCTTTGAGCAACCTTTATCCAGATAGTAATTTCTTCCAGAAGATTTTCATTGCAGAACCAGTAGCAGAATATAATGCTATTCATGGTGAC AAATTTCAGGGTCAAATGAATGATGCATCTGAAGTGCTTGCTGTTATATTTGATTGCCTTCATCAAGCATTTACTTCTGGATCAACAGTCTCTGATTCAG ATTCAGTAGGAAGTAGTTCCATGGGGGCTTGGGATTGCACCAACAACAACTGTTTAGTCCACTCCATATTCGGCATGGACATATTTGAACGGATGAACTG CTACAGCTGTGGTTTGGAGTCCAGGCATCTGAAGTATACATCTTTCTTCCATAACATAAATGCAAGCGCTCTTAGAACTATGAAAGTGATGTGTACTGAA AGCTCCTTTGATGAGCTTCTAAATCTCGTAGAGATGAATCATCAATTAACTTGTGATGATGAAGTTGGCGGTTGCGGGAAACCCAACTACATTCATCATA TTCTGTCGACTCTACCACATGTGTTTACAGCAGTCCTGGGATGGCAAAATACATCTGAAAGTGCTAAGGATATTGCAGCAACTTTGGCATCTTTAAGCAC GCAGATCGATGTTAGTGTCCTCTACCGCGGTTTGGATCCGAAAAACGTGCATGGCTTGGTTTCAGTGGTCTGCTATTATGGGCAACATTATCATTGCTTT GCATACAGTCACGATCGTGAACAGTGGATCATGTATGACGACAACACTGTCAAGGTAATCGGTGACTGGGCAGACGTTCTTATCATGTGCAAGAAAGGGC ATTTACAACCTCAGGTTCTTTTCTATGAAGCTGTAAACTAG
AA sequence Show only first row Show all	>Lus10008630 pacid=23180096 polypeptide=Lus10008630 locus=Lus10008630.g ID=Lus10008630.BGIv1.0 annot-version=v1.0 MGHKKRAVAPRSKHQSPHSAASAAVGDAAAGVGNEAELCPDPNNNLSIVKIEPELDFPGSSSYSAVKLECERALTALRRGNHTKALRLMKESCSRHGDYS PHSALIYRVQGTVCVKVASIIDDPNAKQRHLRNAVDSARKAVALSQNSIELIPIRRATEDPMEARLSQTRRPNEIKKATKTPEERRKEIEVRVAAARLLQ QKSDTDLGRNDGERNNNDKGVELSSGNEKRGERRKYGSNAKRTGTNTERKDWVRSYWNSMKTDMKKELLKIRVSDLKGYFGLSKDGLATEVLNDALTSEE GETGWRFWVCCRCSEKFPTPEKHIQHVVQEHMGNLDPKMQAVLPQNVESSWIEMIMNYSWKPLDVSSAAKMLGHQRKFQDSEPDCSLENHDGDCEDYKDA CDSSPEKENVGDGCSESSNGGKDTDGGADSECRECNVKEGSLAYSIESWPSSDDSERARLLERIHDVFESLISHKYLATSHITKVLQISKDELRTLASGS QLLNHGLDETPFLICFLEAPQLRRILKFLQDLAHACGLSRYSEKGNALDNRNNGVHVSEYKDDLVLNGDRSYLYLDERLLASEYARENDTSLCWGNPGKG VPSDTDSLLSWIFSGPSSNDQLQLWMRTKEEKMQQGMDIVQNLEKEFYHLQSLCERKCEHLSYEEALQTVETFCREEVKNRDDMTLSELESCDSILRRRR DELANCVNDDVMLSGRSSELDVISSVLKEAETLNVNHFGYEDNYGAMASQLCDLESGENSDGRGNDYIHQMDSFIEVAIEKQKDQLSVELSKIDVRIMRI VSGMQHLELKLEPVSARDYQSILLPLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKAAHGGSDPSRNSQEKKDKKRNKELKKTKDYKGGSGN EQALLHDETTELEIFALSSEVDLEAEILPSSNGVDLRKQEEEFRRKIELEEEERKLEETLEFQRRIENEAKVKHLAEQQHKRAYKTFPDNFTEGQQDASL EQAANKENDSSIMGPLAKTNGLTNKFGAGRSTTGNASELLIESIRLPGSEALDKLNQGLPNGVTMENGILSSDRRTGRRARRQKSSSRSADSNCQLISAE KENTEAVTVNLGSEDTGSKTLRQLRVEEDDEERFQEDLKKAVRQSLDTFQGHESIPSIPRLRMRPKTTLETKSSGSSQHEVTVEHENGTDVFGSGLKNEV GEYNCFLNVIIQSLWHLRRFRSEFMKRSTLEHVHVGDPCVVCALYDILSALSLASIDVQREAVAPTSLRLALSNLYPDSNFFQKIFIAEPVAEYNAIHGD KFQGQMNDASEVLAVIFDCLHQAFTSGSTVSDSDSVGSSSMGAWDCTNNNCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTE SSFDELLNLVEMNHQLTCDDEVGGCGKPNYIHHILSTLPHVFTAVLGWQNTSESAKDIAATLASLSTQIDVSVLYRGLDPKNVHGLVSVVCYYGQHYHCF AYSHDREQWIMYDDNTVKVIGDWADVLIMCKKGHLQPQVLFYEAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	0	1
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	1.0	0.9514
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	1.4	0.9487
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	7.5	0.9219
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	7.5	0.9275
AT4G39420			unknown protein		Lus10030711 [exp]	8.4	0.9262
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	8.4	0.9058
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	11.5	0.9400
AT5G07740			actin binding (.1)		Lus10015724 [exp]	12.0	0.9232
AT3G60920			unknown protein		Lus10009306 [exp]	12.3	0.9300
AT2G46560			transducin family protein / WD...		Lus10005975 [exp]	16.0	0.9290

Compare expression of checked genes

Lus10008630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.