Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18890 853 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT1G74740 852 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 717 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT5G12480 689 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT5G19450 679 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT3G57530 671 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 659 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 590 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 542 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G04870 534 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042185 [exp] 835 / 0 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10036667 [exp] 800 / 0 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10004807 [exp] 699 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027361 [exp] 695 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10002482 [exp] 693 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 693 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10014907 [exp] 684 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 679 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10026742 [exp] 666 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071700 [exp] 907 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 905 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 716 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.016G054600 [exp] 703 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G101300 [exp] 700 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.001G257100 [exp] 698 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G052900 [exp] 693 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 690 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.007G127000 [exp] 605 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 547 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10008631 pacid=23180062 polypeptide=Lus10008631 locus=Lus10008631.g ID=Lus10008631.BGIv1.0 annot-version=v1.0 ATGGGAAACTGTAACGCCTGCGTGAGACCGGATTCCCCGCCGAGGGACTCCAAACACCAAAAGCCTAAAAAGAAGCCACCGCCGTCGCCGGCGAAAAAGA AAGCCAAGAAGCCCAACCCGTTCTCGGAAGACCCGGCCCGATCCCCGGCTCCAATCCGGGTGCTGAAGGACCACCACGTGGGGCCTCACCGTCCCCGGAT CGGCGACAAGTACATCCTCGGCCGGGAGCTGGGGCGTGGCGAGTTCGGGATCACCTACCTCTGCACGGACAGGGAGACCAAGGAGTCGCTGGCTTGCAAG TCCATCTCCAAGCGGAAGCTCAGGACGGCGGTCGACGTGGAGGACGTCAGGAGGGAAGTGGCGATCATGTCCAGCTTGCCTGAACATTCAAACATAGTCA AGCTAAGGGCAACCTACGAGGATTTGGAGAATGTTCATCTGGTGATGGAGCTTTGTGAAGGCGGGGAGCTTTTCGACAGGATTGTGGCTAAAGGGGATTA CAGTGAGCGAGGGGCTGCCACTGGTGTACGGGTGCTCGCCGGCGGTGTTATGTGGTGTCGTATCGCCGAAGTTGTTAGGATGTGTCATGATAATGGCGTT ATACATAGAGATTTGAAGCCTGAGAACTTCCTTTTTGCTAACAAGAAGGAGAATTCTGCTCTTAAGGCCATTGATTTCGGGCTGTCCGTGTTCTTCAAGC CTGGGGAGAAGTTTACAGAGATAGTAGGGAGTCCCTATTACATGGCGCCGGAGGTGTTGAAGAGGAATTATGGGCAAGAGGTTGATGTGTGGAGTGCTGG AGTTATACTTTACATTCTGCTATGTGGGGTTCCTCCATTTTGGGCAGAGACGGAGCAGGGTGTTGCCCTATCGTTTTTGAGGGGGGGGCTTGATTTCAAG AGGGAGCCATGGCCACAGATTTCACAAAGTGCCAAGGGTCTTGTTCGGCAGATGTTGGAACCGGATCCTTCCAAGCGCTTAACTGCTCAGCAAGTCCTAG ATCATCCGTGGATTCAAAATGCAAAGAAAGCTCCTAATGTCCCGCTGGGAGATATTGTGAGGACGAGACTCAAGCAGTTCTCCGTGATGAACAAATTCAA GAAGAAGGCTCTCCGGGTAATTGCTGAACACTTGTCACATGAAGAAGTTGAGGTCATAAGAGATATGTTCACCCTGATGGATACTGACGGTGATGGTAAA GTCTCTTATGAGGAACTAAGGGCTGGCCTTCGGAAGGTTGGTTCGCAGTTGGCTGAACCAGAGATCAAGATGCTTATGGAAGTGGCTGATGTTGATGGGA ATGGCATACTGGACTATGGAGAGTTTGTAGCAGTTACAATTCACTTGCAGAAGATGGAGAACGATGACCATTGCCGCAGGGCATTTGTGTACTTCGACAA AAATGGCAGTAGCTATATCGAACTAGACGAACTACGAGAGGCCTTGGCAGACGAAAACGGTGAAACTGATGATGACGTGCTCAACGAGATCATGCGGGAA GTCGACACTGACAAGGATGGACGCATTAGCTATGATGAATTCGTGACGATGATGAAAGCTGGAACGGACTGGAGAAAGGCATCGAGGCAGTACTCGAGGG AAAGATTCAAGAGCCTGAGCGTCAACTTGATGAAAAATGGGTCCCTCCAGCTCCATGACGCGCTCACTGGTCAAGCCATCGCCGTGTAG
AA sequence Show only first row Show all	>Lus10008631 pacid=23180062 polypeptide=Lus10008631 locus=Lus10008631.g ID=Lus10008631.BGIv1.0 annot-version=v1.0 MGNCNACVRPDSPPRDSKHQKPKKKPPPSPAKKKAKKPNPFSEDPARSPAPIRVLKDHHVGPHRPRIGDKYILGRELGRGEFGITYLCTDRETKESLACK SISKRKLRTAVDVEDVRREVAIMSSLPEHSNIVKLRATYEDLENVHLVMELCEGGELFDRIVAKGDYSERGAATGVRVLAGGVMWCRIAEVVRMCHDNGV IHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGEKFTEIVGSPYYMAPEVLKRNYGQEVDVWSAGVILYILLCGVPPFWAETEQGVALSFLRGGLDFK REPWPQISQSAKGLVRQMLEPDPSKRLTAQQVLDHPWIQNAKKAPNVPLGDIVRTRLKQFSVMNKFKKKALRVIAEHLSHEEVEVIRDMFTLMDTDGDGK VSYEELRAGLRKVGSQLAEPEIKMLMEVADVDGNGILDYGEFVAVTIHLQKMENDDHCRRAFVYFDKNGSSYIELDELREALADENGETDDDVLNEIMRE VDTDKDGRISYDEFVTMMKAGTDWRKASRQYSRERFKSLSVNLMKNGSLQLHDALTGQAIAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	1.0	0.8986
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	1.4	0.8896
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	2.2	0.8444
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	3.9	0.8483
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	6.0	0.8188
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	6.0	0.8286
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	6.5	0.8001
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	7.5	0.8071
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	7.7	0.8090
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	7.7	0.8455

Compare expression of checked genes

Lus10008631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.