Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29150 662 / 0 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) AT2G26990 75 / 2e-14 COP12, ATCSN2, FUS12 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) AT3G61140 46 / 3e-05 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036805 [exp] 752 / 0 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10037125 [exp] 750 / 0 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10042184 [exp] 455 / 3e-160 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10029167 [exp] 84 / 5e-20 AT1G29150 77 / 1e-18 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10012998 [exp] 77 / 5e-17 ND 44 / 4e-06 Lus10037417 [exp] 77 / 4e-15 AT2G26990 799 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041295 [exp] 77 / 4e-15 AT2G26990 798 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041364 [exp] 43 / 0.0004 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10036566 [exp] 42 / 0.0007 AT3G61140 709 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020300 [exp] 704 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.010G164200 [exp] 701 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.008G042400 [exp] 691 / 0 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.006G277900 [exp] 561 / 0 AT1G29150 498 / 1e-175 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.001G222700 [exp] 82 / 1e-16 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.009G020900 [exp] 82 / 1e-16 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.002G154500 [exp] 43 / 0.0004 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10008632 pacid=23180053 polypeptide=Lus10008632 locus=Lus10008632.g ID=Lus10008632.BGIv1.0 annot-version=v1.0 ATGTCTACTTCATACCTGCCAGCAACAACAGACACTATTGCTCAAGCTCTGGAAGCTAAGGTTCCATCTGAAGCCATTTCCATCCTCTACCGTGTACTTG AAAATCCTTCTTCCTCTCCTGAAGCCTTGCGCACAAAAGAACAGGCCATTACGAATCTTTCTGATCTGCTCAGACAAGAAAATAGGGGTGAGGACCTCCG TAGCCTTTTGACTCAGCTGAGGCCATTCTTTGCCATGATTCCCAAGGCTAAAACTGCAAAAATTGTCAGAGGAATCATTGACTCTGTTGCCAAAATTCCT GGAACTTCTGATCTGCAAATTGCCCTGTGCAAGGAAATGGTGCAATGGACTCGTGCAGAAAAGAGGACATTTCTTAGGCAGCGAGTTGAAGCAAGGCTTG CAGCGCTTCTTATGGAAAGCAAAGAGTACTCAGAAGCATTAGCTCTTCTTACTGACTTGGTTAAAGAGGTAAGGAGGTTGGATGACAAGTTGCTACTTGT GGACATAGACTTGCTAGAGAGTAAGCTGCATTTTTCGCTCAGGAACCTGCCCAAGGCAAAAGCTGCTCTTACAGCTGCAAGGACTGCTGCAAATGCTATA TATGTACCTCCAGCCCAGCAAGGTACAATTGATTTGCAAAGTGGCATTCTTCATGCCGAGGAGAAGGATTATAAGACGGCTTACAGCTACTTCTTTGAAG CGTTTGAGTCTTTCAATGCTCTCGAGGACCCCAGGGCAGTCTTCAGTCTTAAATACATGTTATTGTGCAAGATTATGGTTAGCCAAGCTGATGATGTTGC TGGTATAATATCCTCTAAAGCTGGCCTCCAGTATGTGGGACCTGACCTGGACGCTATGAAATCAGTCGCTGATGCTCACTCGAAGAGATCCTTGAAGTCG TTTGAGACTGCACTGCGGGACTACAAGGCCCAGCTAGAGGAAGATCCCATTGTTCACCGACATCTCTCTTCTCTATACGACACTTTGTTGGAGCAAAATT TGTGTAGGCTGATTGAGCCTTTCTCGAGGGTTGAGATTGGACATATTGCCGAGCTGATTGAACTACCTATCGACCATGTGGAGAAGAAGCTCTCACAGAT GATCCTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGCTGTCTTGTCATCTTTGATGATCCCAAGACGGACGCCATATATCCAGATACACTA GAGACCATTGCCAACATGGGAAAGGTGGTTGACAGTTTGTTTGCGAGGTCTGCCAAGATCATGGCATGA
AA sequence Show only first row Show all	>Lus10008632 pacid=23180053 polypeptide=Lus10008632 locus=Lus10008632.g ID=Lus10008632.BGIv1.0 annot-version=v1.0 MSTSYLPATTDTIAQALEAKVPSEAISILYRVLENPSSSPEALRTKEQAITNLSDLLRQENRGEDLRSLLTQLRPFFAMIPKAKTAKIVRGIIDSVAKIP GTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALALLTDLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKSVADAHSKRSLKS FETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIGHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPDTL ETIANMGKVVDSLFARSAKIMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10008632 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	4.6	0.9219
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	5.0	0.9443
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	5.7	0.9412
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	11.0	0.9380
AT4G15640			unknown protein		Lus10033970 [exp]	11.0	0.9199
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	11.0	0.9284
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	12.7	0.9381
AT1G50920			Nucleolar GTP-binding protein ...		Lus10002558 [exp]	14.5	0.9220
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	14.5	0.9317
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	18.8	0.9324

Compare expression of checked genes

Lus10008632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.