Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03630 493 / 3e-174 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G52880 473 / 1e-166 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT3G09940 435 / 2e-151 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G27820 332 / 2e-110 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT1G63940 264 / 6e-84 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G17240 59 / 4e-09 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 54 / 1e-07 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT4G28220 49 / 4e-06 NDB1 NAD(P)H dehydrogenase B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035593 [exp] 622 / 0 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2) Lus10022260 [exp] 327 / 4e-108 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10013079 [exp] 323 / 3e-106 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10028763 [exp] 243 / 2e-75 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Lus10037825 [exp] 62 / 5e-10 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 61 / 6e-10 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 57 / 2e-08 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 56 / 4e-08 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018541 [exp] 42 / 0.001 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114800 [exp] 534 / 0 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G346200 [exp] 339 / 5e-113 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.001G099600 [exp] 258 / 3e-81 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.008G100800 [exp] 65 / 4e-11 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 62 / 3e-10 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.003G178200 [exp] 44 / 0.0002 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 42 / 0.0005 AT3G54660 872 / 0.0 glutathione reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10008633 pacid=23180090 polypeptide=Lus10008633 locus=Lus10008633.g ID=Lus10008633.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAGAGCTTCAAGTATGTCATCCTCGGCGGGGGCGTTTCTGCGAGGACCGTATCTTTTCATTTTATTGATGTTCCAACTCACACGATCGCTT GCGTACTGTCTTCATCTGAACTTCGAATCCTGATGATGCAGGGATATGCAGCGAGGCAGTTTGAAAAGCAAGGGGTCAACGCTGGTGAACTGGCAATTAT CTCAAAGGAGGCGAAGAGAGATGTCGGCCATCTAATGGAAATATGTTCTCTGGTTCCTATGGTTGCAGGGATTGAGTTGATCCCCGACTTTGGTGTAGAA GGAGCTGATGCCAAGAACATCTTCTACTTGAGAGAAATCGACGATGCTGATAAGCTGGTTGAAGCTATTAAGGCAAAACCAAACGGAAAGGCTGTGATTG TTGGAGGAGGGTACATTGGGCTTGAGCTTAGTGCTGCTTTGAAGATCAACAATCTTGATGTTACCATGGTCTATCCTGAGCCCTGGTGCATGCCCCGCCT TTTCACAGCTGAGATAGCTGCTTTCTATGAAGGCTATTATGCTAACAAGGGAATCAAGATTATCAAGGGGACCGTCGCTGTTGGATTTACTTCTGATTCA AATGGAGAGGTGAAGGAAGTTAAACTGAAGGATGGCACTGTGCTGGAAGGTGATATTGTAGTTGTTGGTGTTGGAGGAAGGCCACTTACCGCCTTGTTTA AGGGGCAGGTTGAAGAAGAGAAGGGTGGAATCAAGACTGATGGATTCTTCAAAACCAGCGTCGCTGACGTATATGCTGTGGGGGATGTTGCTACTTTCCC TATGAAGATCTACAACGAGATCCGAAGAGTTGAACACGTTGACCACGCCCGTAAATCAGCTGAACAGGCAGTTAAGGCCATACTGTCGACCGAGAAAGTT GAAGAATACGATTACCTTCCATACTTCTACTCCCGTGCCTTCGACCTGTCGTGGCAGTTCTACGGGGACAACGTGGGGGAGACAGTGCTATTCGGCAACA ACGATCCAGCATCAGAGAAGCCAAAGTTCGGTACTTACTGGGTTAAGGACGGGAAGGTGGTTGGAGCGTTCCTGGAAGGTGGTTCCCCTGATGAAAACAA GGCCATCGCTAAAGTTGCCAGGATGCAGCCTGTGGTCGACAACATTGGGTTGCTAGTTCAAGAAGGTCTTGGCTTTGCCTCCTTTTACTAG
AA sequence Show only first row Show all	>Lus10008633 pacid=23180090 polypeptide=Lus10008633 locus=Lus10008633.g ID=Lus10008633.BGIv1.0 annot-version=v1.0 MAEKSFKYVILGGGVSARTVSFHFIDVPTHTIACVLSSSELRILMMQGYAARQFEKQGVNAGELAIISKEAKRDVGHLMEICSLVPMVAGIELIPDFGVE GADAKNIFYLREIDDADKLVEAIKAKPNGKAVIVGGGYIGLELSAALKINNLDVTMVYPEPWCMPRLFTAEIAAFYEGYYANKGIKIIKGTVAVGFTSDS NGEVKEVKLKDGTVLEGDIVVVGVGGRPLTALFKGQVEEEKGGIKTDGFFKTSVADVYAVGDVATFPMKIYNEIRRVEHVDHARKSAEQAVKAILSTEKV EEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGNNDPASEKPKFGTYWVKDGKVVGAFLEGGSPDENKAIAKVARMQPVVDNIGLLVQEGLGFASFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	0	1
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10016603 [exp]	2.4	0.9031
					Lus10021100 [exp]	2.8	0.9108
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	3.3	0.9116
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	5.0	0.8844
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	6.2	0.8626
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024647 [exp]	7.7	0.8670
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	9.6	0.8580
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	12.0	0.8670
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	12.5	0.8884
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	13.4	0.8796

Compare expression of checked genes

Lus10008633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.