Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52890 715 / 0 KIPK KCBP-interacting protein kinase (.1.2) AT2G36350 707 / 0 Protein kinase superfamily protein (.1) AT5G03640 660 / 0 Protein kinase superfamily protein (.1) AT5G47750 556 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 530 / 2e-180 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 526 / 5e-179 D6PK D6 protein kinase (.1) AT2G44830 521 / 4e-173 Protein kinase superfamily protein (.1) AT5G40030 508 / 1e-171 Protein kinase superfamily protein (.1) AT3G27580 502 / 3e-168 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT3G12690 475 / 8e-158 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035591 [exp] 1602 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 602 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 593 / 0 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10016629 [exp] 551 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 543 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 542 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 528 / 9e-178 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 520 / 3e-176 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 506 / 2e-170 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114900 [exp] 747 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.004G186300 [exp] 643 / 0 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 637 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 546 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 541 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 535 / 5e-179 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 532 / 2e-178 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 528 / 3e-176 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 520 / 4e-176 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 471 / 6e-156 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008634 pacid=23180061 polypeptide=Lus10008634 locus=Lus10008634.g ID=Lus10008634.BGIv1.0 annot-version=v1.0 ATGGGGTCATATTCAGGCACGTCTGAGATCGTTGAAGCAAGGGAAGAATATACAGATTCCGTTATCCATTCGAACAAAGGAGCGTATCGATCTTATTCTG GTATAACCCTGGGCGATCGGAGGCCGTTGAAGCTCGGGGACAAGGATTCCCTAGAGGATGAAATCAACCAGCTCTTTGAAGCCATCAGTCTCAAGAGTGC TTCCAAGGGGTTGGGAGCTTCTAATAATCAAGCGAGCACAACTTCGAGCCCCTTGACGATGAGGAGTGCAATGAAGAGGCCGATCGGTGTTGGAGCATCG TATTCGTTGTGTAATTCGCCTCGGGTCAGTAGCTCGGAAGGTGTGTCTCTGAAGCAGGCATTGAGGGACCTTTGTCTCTCCAAGGCATCTGAAATGGCTG CTATGAAAAGGATGTCTTCTAAGCCGCCATTGGCTTCGCCTAGGGTTTCCGAAGCTGGAGGGAGGATTAAGAACATGTACAATAATTCTTCAGTGTCTGT TGAAACAACCAAGAAAGATTTTGGTAAAGGGCCAATGGTGGAGGAGATCAGCAAGTCAAATTCCTCGCAGAAAATGCTTCGAGTAGAGCTCCCTAAGATG CGGTCGTTGAACCCGAGCGCTCAGTCTTCTCCTCGGTTGCAGGGATTGAAGTTTTCATCGAGCCAAAGCGCTCAGTCTTCCCCTCGGTTGCAGTCGTTGA AGACTGAGCTTCAGACTGAGATTCAGTTGGAATCTAAGAAAGGTGGAGGAGGTCATAGTAGTAGCAACATGTCATCGTCATCTCCAAGATTGACTGATCA GAAGAAGGTGCAAAACGGTACTGGTACCGTTCATAAAACCCCGAATCCGATTGTTTCTTCTGCAGCAAGCGAAGTCGGAAGTCAAGCATCGCACTTTTCA TCCAAGAGCGCTCATTCTTCGCCTCGATTGCGTCCTGCGGTTGCATCGAAGATGCCAAAGGAGAGGGTTACCATTGCATCTTCCATCGCTTGTCCCGAGT CACCCGATAACAGTCCCGTAAAAAAAGCTCCTGTCTTTACAAAGACCAGTCGGAAAGGCAGGTTGCCCACGAAGTCTAGGGCAACAAAGAACACGAAGCA TGCTCGTTCGGTTAAAACGGTGATAAGAAGCAGGACCAGCATCAAGAAGAAACGAAAACCGCCCGGTTCGAATTCTGTGGGATCGGGTTCTGATGAAGGT ATTCCCGGTTCGGTGGTCCCTACTCCCCCAACCCAGCTAGTATGCCAGAAATGTCAATGTTCACTATCAAATGCAAGCGAAGGTCCAGTTGAGGACCCAA CAGATTCCATTGTGGTGAAACCAGAATTCACAAAGAAGAAGAATTCAGAAAGGGGGAAGGGGGGCGAGTTTTCTCAAAGCTCGAAGAGTAGCTTGGGGGA CTACAGCAATAGTACTAGTACGAGCAACAGTGAGGAAAGCAATGCGAGCAGGTTTAGCTGCAGCAACAGGCCGCACATGTCGAAGGATGCCAGGTGGCAG GCTGTTCGTCACGTTAAGACGAGGGACAAAGGGTTGACATTGGCTCATTTCAATCTCTTGAAGAAGCTTGGGTGTGGAGATATAGGAACGGTGTACCTTG CTGAGCTTGTAGGTACAAATTGTCTCTTCGCAATTAAAGTCATGGATAACGAGTTCTTGGCGAGGAGGAAGAAGCTTCCGAGGGCTCAAACCGAAAGGGA GATACTTCGGATGTTGGATCATCCTTTTTTGCCTACGCTTTATGCACATTTCACTTCCGATAATCTGTCGTGTTTGGTTATGGAGTATTGTCCTGGTGGT GATCTTCATGTGCTCAGGCAGAAGCAACTCGGACGATGCTTCCCCGAGCCGGCTGCCAGGTTTTACGTTGCTGAAGTCCTCCTTGCTCTGGAGTATCTAC ACATGCTTGGAGTTGTGTATCGAGACCTGAAACCGGAGAACATCCTGGTTCGAGAAGATGGACACATTATGCTCACAGATTTTGACCTTTCGTTACGATG TAACGTAAGTCCGACTCTCCTGCAATCATCATCAACCACCTTCATGGAGCCGCCTCGAATGTCCGGTCCATGCACATCGTCAAGCTGCATCGACCCTTTC TGCATCGAGCCATCATGCCGCGTCTCGTGTTTCACTCCTCGAAGAATGTTACCCCCTTCCGCTGCAAAGGCAAGGAAGGCCAAAGCCGATCTTGCAGCTC ACCTCCGAACATTGCCTCAGCTAGTAGCTGAGCCCACCGATGCCCGTTCAAACTCGTTCGTCGGTACCCACGAGTACTTAGCTCCCGAGATCATCAAAGG AGATGGCCATGGTGCAGCGGTCGATTGGTGGACGTTTGGGATATTCCTGTACGAGCTTATATATGGTAGGACGCCTTTCAAAGGTGCAGGTAACGACGAA ACTTTAGCGAATGTGGTGCTGCAGGGCCTCCGGTTTCCCGAGGGCCCGCTCGTGAGCTTCCAAGCGAGGGATTTGATTCGAAGATTGCTGGTGAAGGAAC CGGAGAACCGACTGGGGACGGTGAAAGGTGCTGCTGAGATCAAGCAGCATCCTTTCTTTGAAGGGCTGAACTGGGCGCTGATTCGGTGTGCGATTCCTCC GGAGCTGCCCGATTATTACGATGTTAGTGTGCAGAATTCGGGGGCTGATGAACATGGGAGTAGTGATTATTTGGAGTGCAAAGCTACCGGTGAGCATCTC GAGTTCGAGTTGTTCTGA
AA sequence Show only first row Show all	>Lus10008634 pacid=23180061 polypeptide=Lus10008634 locus=Lus10008634.g ID=Lus10008634.BGIv1.0 annot-version=v1.0 MGSYSGTSEIVEAREEYTDSVIHSNKGAYRSYSGITLGDRRPLKLGDKDSLEDEINQLFEAISLKSASKGLGASNNQASTTSSPLTMRSAMKRPIGVGAS YSLCNSPRVSSSEGVSLKQALRDLCLSKASEMAAMKRMSSKPPLASPRVSEAGGRIKNMYNNSSVSVETTKKDFGKGPMVEEISKSNSSQKMLRVELPKM RSLNPSAQSSPRLQGLKFSSSQSAQSSPRLQSLKTELQTEIQLESKKGGGGHSSSNMSSSSPRLTDQKKVQNGTGTVHKTPNPIVSSAASEVGSQASHFS SKSAHSSPRLRPAVASKMPKERVTIASSIACPESPDNSPVKKAPVFTKTSRKGRLPTKSRATKNTKHARSVKTVIRSRTSIKKKRKPPGSNSVGSGSDEG IPGSVVPTPPTQLVCQKCQCSLSNASEGPVEDPTDSIVVKPEFTKKKNSERGKGGEFSQSSKSSLGDYSNSTSTSNSEESNASRFSCSNRPHMSKDARWQ AVRHVKTRDKGLTLAHFNLLKKLGCGDIGTVYLAELVGTNCLFAIKVMDNEFLARRKKLPRAQTEREILRMLDHPFLPTLYAHFTSDNLSCLVMEYCPGG DLHVLRQKQLGRCFPEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCNVSPTLLQSSSTTFMEPPRMSGPCTSSSCIDPF CIEPSCRVSCFTPRRMLPPSAAKARKAKADLAAHLRTLPQLVAEPTDARSNSFVGTHEYLAPEIIKGDGHGAAVDWWTFGIFLYELIYGRTPFKGAGNDE TLANVVLQGLRFPEGPLVSFQARDLIRRLLVKEPENRLGTVKGAAEIKQHPFFEGLNWALIRCAIPPELPDYYDVSVQNSGADEHGSSDYLECKATGEHL EFELF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	0	1
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	1.4	0.8941
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10029510 [exp]	2.8	0.8939
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	7.7	0.8632
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10039606 [exp]	8.2	0.8895
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	8.7	0.8803
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	10.2	0.8898
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	13.0	0.8578
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10039398 [exp]	15.1	0.8092
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	18.4	0.8455
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	19.4	0.8796

Compare expression of checked genes

Lus10008634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.