Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03810 457 / 3e-162 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 455 / 3e-161 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 442 / 4e-156 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 437 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 385 / 7e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 255 / 1e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G04570 254 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 253 / 8e-82 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 252 / 1e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 251 / 1e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035590 [exp] 609 / 0 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 483 / 2e-172 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008639 [exp] 480 / 5e-171 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 431 / 4e-152 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 393 / 1e-136 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 392 / 2e-136 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 354 / 2e-121 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 267 / 4e-87 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 265 / 2e-86 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118300 [exp] 498 / 3e-178 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 452 / 3e-160 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 357 / 9e-123 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 333 / 1e-112 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 302 / 2e-101 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 274 / 6e-90 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 272 / 3e-89 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160200 [exp] 265 / 1e-86 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 261 / 2e-84 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 260 / 2e-84 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10008635 pacid=23180072 polypeptide=Lus10008635 locus=Lus10008635.g ID=Lus10008635.BGIv1.0 annot-version=v1.0 ATGGGTACTGTTGAATGGGGAGCTGCAGTTCTAGTTCTTCTTGCTATGGTTTCTTCACTGGCTATTGCTCAACCTATAGTTCCATCACTCATCATCTTTG GAGACTCCATTGCTGACGTGGGTAACAATAACAATCTCACTACTATCATCAAGGCCAACTTCCCTCCTTATGGGAGGGACTTTGTTACTCATACACCAAC CGGAAGGTTCTCCAATGGAAAGCTGGCTATAGACTTCACTGCTGACTATCTGGGATTTGACACATACCCACCACCTTATCTGAGCCAACAAGGCAGAACA GGAGATGTTCTTACTGGAGTCAATTTCGCTTCGGCTGGTTCAGGTTTCTATAACCCAACAGCATTGCTATATGGAGCCATTCCGTTGACACTGCAGCTGA ACTACTACAGGGCGTACCAGACAAGAGTGGTGAACATGGTTGGGAGAGAAAGAGCCAGTGAGATATTCTCCAAGGGGATCCATCTTATAAGTGCTGGAAC CAGTGACTTCATTCAGAACTATTACATCAACCCTCTTCTGTACGGAGTGTTGACTCCTGATCGATTCTCCGACTTGCTCATGAGATCTTACTCTAGCTTC ATTCAGAACTTGTATAACCTTGGAGTAAGAAGGATTGGAGTGACAAGCCTGCCACCAATAGGATGTTTACCTGCAGCTATCACCCTCTTTGGCCTTGGGA GCAATCAATGTGTCGAGAGGCTGAACCGTGACGCTAGTTCATACAACCAGATTCTGAACCGAACTTCTCAGAACCTTATAGCAGTAATGCCTGACCTCAA GCTTGTTGTCTTTGATATTTACCAGCCCCTCTTAAGCCTGATTGCCAAGCCGGGTGACAGTGGGTTCTTTGAGGCAAGAAGGTCTTGCTGTGGGACAGGT ACCCTCGAAACCTCAGTGCTGTGTAATGCAAGATCTATGGGAACGTGTTCCAACGCTACACAGTATGTGTTCTGGGACGGATTCCATCCGTCTGAAGCAG CTAATGAGGTCCTAGCACAAAGCCTGCTTGAAGCCGGAATCTCCCTCATATCGTGA
AA sequence Show only first row Show all	>Lus10008635 pacid=23180072 polypeptide=Lus10008635 locus=Lus10008635.g ID=Lus10008635.BGIv1.0 annot-version=v1.0 MGTVEWGAAVLVLLAMVSSLAIAQPIVPSLIIFGDSIADVGNNNNLTTIIKANFPPYGRDFVTHTPTGRFSNGKLAIDFTADYLGFDTYPPPYLSQQGRT GDVLTGVNFASAGSGFYNPTALLYGAIPLTLQLNYYRAYQTRVVNMVGRERASEIFSKGIHLISAGTSDFIQNYYINPLLYGVLTPDRFSDLLMRSYSSF IQNLYNLGVRRIGVTSLPPIGCLPAAITLFGLGSNQCVERLNRDASSYNQILNRTSQNLIAVMPDLKLVVFDIYQPLLSLIAKPGDSGFFEARRSCCGTG TLETSVLCNARSMGTCSNATQYVFWDGFHPSEAANEVLAQSLLEAGISLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	0	1
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	1.7	0.9684
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	2.0	0.9793
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	2.4	0.9794
AT5G02090			unknown protein		Lus10010878 [exp]	3.7	0.9648
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	6.3	0.9668
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	8.7	0.9682
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	9.5	0.9651
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	10.2	0.9611
AT3G12955			SAUR-like auxin-responsive pro...		Lus10031790 [exp]	10.4	0.9427
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	14.1	0.9298

Compare expression of checked genes

Lus10008635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.