Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53090 1266 / 0 UPL7 ubiquitin-protein ligase 7 (.1.2) AT3G17205 283 / 1e-79 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G70320 164 / 1e-40 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 159 / 8e-39 UPL1 ubiquitin-protein ligase 1 (.1.2) AT4G12570 92 / 2e-18 UPL5 ubiquitin protein ligase 5 (.1) AT4G38600 71 / 6e-12 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT5G02880 68 / 3e-11 UPL4 ubiquitin-protein ligase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035589 [exp] 2074 / 0 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10037820 [exp] 218 / 4e-58 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10017098 [exp] 205 / 9e-54 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10032830 [exp] 169 / 6e-42 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 167 / 3e-41 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 150 / 3e-36 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10010493 [exp] 100 / 3e-21 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10003792 [exp] 81 / 1e-15 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10019908 [exp] 77 / 7e-14 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096500 [exp] 1468 / 0 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.010G150000 [exp] 284 / 8e-80 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 284 / 9e-80 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.002G110500 [exp] 170 / 2e-42 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 161 / 1e-39 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 152 / 7e-37 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.006G011701 [exp] 98 / 2e-20 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 92 / 2e-18 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.004G174700 [exp] 81 / 4e-15 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.016G085200 [exp] 81 / 7e-15 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10008636 pacid=23180066 polypeptide=Lus10008636 locus=Lus10008636.g ID=Lus10008636.BGIv1.0 annot-version=v1.0 ATGGACGAGTCCCGTAAGCATCAGGTTTCTTCCTTCTTCCCCTTCTCTCTTATACGATCTTGCGCCGTCCATTTGACGATTCGATTCAAAAGCTTTGGTG CATTTTTGGATCGTTTTCAGGTTTCCTTAAGGGGAGCAAGTGCGAGAGAGATCTCTCGGGACGCCCTGCTCGAGAAGCTCTCCCAGGAGAGGGAGCTCCG CAATTACGCTAGGCGAGCTTCAGCTGCTGCTATCTTCATCCAGAGGGTCTGGAGGCGCTATAGCTTGACAAAGAGGATAGCTTTGCAACTTCAAGGGGAA TGGGAAGCTGTGGTGAATGGTCATGATGGTTCAAGGTCTGCTGGTTGGATTTCTGGCAGTGTCTTAAGACCTTTTCTTTTCTTCGTCGAGGTTTTATCCA CTCGGCATCAGAAGGTCCGGACTGTTGATAGGAACTGCATACATAGTTGCTTTAAGATCCTGCTGGAGAGTGTAAATTCTACTGGTAAGCTGATCCGGAC TGGTTCGAAATGTGTAATGTATGGCATTATATGGAGTTATATGTGCTTCGCTGTTTACGGTTATGTTAATGATTTAGCTAAGAAGGGAACATCTGCAACT GTCACCTATTCAAGAAATAACATTTGCTCCTTGGCATTGGGTACACTTGATGAACGGAGAACGTGGACCTATCAAATACGGAAGTTGATTTCTCTCTGCT CATTTGTCCTTTCAGAATGTGATAGAACTATTGCCAGGGGTAGAGATATCATTACGCTGGCCTCTCTTGGAATGCGTATTCTTGTCGTGTTATCTGACCA AAAGGGGTGGAAGAGTATTGCTACTGGTGGTTCTGAGGATGCAGAAACAGCTGTGAAGCATTTGATTAGATTTATTGGAAGTCCAGAAAGTGGCTTTTAC AGATCCTTAAGAAGATACATTGAGAGACTTGAAATGCCAATTCAATCTCAGGCGAAAAAGGTGACACAGACAGATGATCTGTTTCTGGTAACTGCTAGTG CAGTAACGTTAGCTCTACGCCCGTTCCATGCTACAAACTCTGATTCTAATGGCTCTGGTCTTCTGGACACGCATTTTGCAGTTATGCATTACAGTTTGTC TCTTCTTACAATTCCTCAACTGACTAAACGGTTACCTGTGGTGCTCCTACCAGCTGTGAAGCACAAGACTGTTCTCTCACCATGCCTCAAGACAATGCTG ATTTTGGGAGATGATATTTTTACCGAGATGGCAAGGATGGATTACTTGGAAGTACCACATTCTACGATCGTCATTCCTCCTGTGGGTTGGACTCTTGCAA ACATAGTGTGTCTTGCTGCTAGCACTGAAAAAGATTTTACAGGTCCTGGCGGAATATTTCAGGATACAGACTATGTGTTCTATGTACGAGTAGTTGCCAA ACTTTCAGATAACCTATTGTCATGGTTTAGTGATGGAGGATGGTCGGAGCATCAAGATCCTCAAGTTAATGCTGAAACTTCAGTCAAGCCTGTTAATTTT TTTCACGAGAACGAGGTTGCACAGGCCTTAATAACATCATATGTGGAGCTACTCAAGCCTATCTTTCAGCAGTGGCACCTGAAAAAGCTTCTCTCGGTCA CAAAAACAGCTGCTAGTTCTGAATCTTCAAGTCCAAGTTGCCCAAGAGCATTGGAGTTAATCGATATTGCATATTTTTATGCATACATGCTCAGAATCTT CTCTGTCTTAAATCCCATGGGAGCTTTGCCAGTTCTCAATATGCTGTCATTTACTCCTGGATTCCTTGTCAGTCTTTGGCTAGCACTGGAAAGTTCACTC TTCCCAGGTCAGATTTCAGTGGGTAATGATGCATATAGTAGCAGAACTTCAAAGAACGCAAAAGTTGATGTTCTTGAAAAGAAACAGAAACCACCAAACA AGGATAGAGGAAGTAAATGGGGTAATGTACTAAATAGAATGACAAGTAAGCCACAAGAAGGCTATGTTGCTGTGTCTACAAGTGATGGACTACCTAGTTA TGAAGTTATCGAGGAGGGGAATGATATTTGGAATGTAGAAACTCTGAAGTATGGTCCAGCAAAAGTTACTAATGATCTGTCATGTCTACTTCATCTGTTC TGTGCTACCTATTCTCACATGCTGTTAGTTCTTGATGATTTAGATTTCTATGAAAAACAGGTTCCTTTCTCGCTGGAGCAACAACGGACAATTGCATCAG CATTGAATACACTAGTCTATAATTCCTTTGTCAATAATAACTCTCAGCATAATAGGCCCTTAGTTGATTCGGCAATTAGATGTTTGCATCTATTGTATGA AAGGGATTGTAGGCACCAGTTTTGCCCACCTTCCCTGTGGCTTTCACCAGCAAAAAGGAGCCGGCCTCCTATTGCTATTGCTGCTCGAACCCATGAGATC ATGCTGACAAATGTAAGGTCAGATGACGCTATGACAAGTCCAGTTCTTAGCTCTGTGAGGTTCTCACTTCTTATTGGCAGGGTTGAGATGTTCAGAGAAT TTGTCAACAGAGATAAAGCATCTCGGAGAATGGCTGGGGAAGTTACTGAACCTGGTTCACGAGCAGTTGAGATTGTAGTTCGTCGGGGTCATATTGTTGA AGATGGATACCGTCAACTGAATTATCTTGGACCTAGGTTGAAATCATCGATTCATGTTTCATTTGTTAGTGAATCTGGGCTTCCAGAGGCAGGATTGGAC TATGGCGGGCTATCTAAAGAGTTCTTGACTGATATATCAAAAACAGCATTCTCTCCAGAATATGGTCTTTTCTCCCAGACTTCGACCTCAGATAGACTTC TAGTTCCAAACCCAGCTGCGAGATATTTAGAGAACGGCACCCAGATGATTGAGTTCCTTGGAAGAGTTGTTGGGAAAGCTCTTTATGAAGGCATATTACT AGATTACTCATTTGCACATGTATTTGTGCAAAAGCTGTTAGGGCGGTATAGCTTTCTTGATGAGCTATCAACTCTTGATCAAGAGTTATACAGAAATCTT ATGTATGTAAAGATGTGCTTGCTACAGCATTATGATGGTGATGTCAAGGAACTCTTGCTCGACTTCACAGTTACAGAAGAATCATTTGGTAAAATGCATG TTATTGAGCTCAAACCTGGTGGCAAAGACATTTCTGTGACCAACGAGAACAAGATGCAATATGTTCATGCTATGGCAGATTATAAGCTTAACAGACAGAT ATTGGCATTTTCAAATGCCTTCTATAGGGGTTTGACCGATCTTATATCACCACCATGGCTGAAGCAATTCAATGCACGTGAATTCAATCAGGTGATTAAA GGTTTTCAACCAAATGAACGATGTTTGCTTCTGAAATTTGTGACGAGCTGTTCTCGTGCTCCTTTGCTTGGGTTCAGACACTTGCATCCTTCCTTTACTA TCCACAAGGTCAGTTGCGAATCTTCCATCTGGGCAAGCATTGGAGGACAGGATGTCGATAGGCTCCCATCGGCTTCAACTTGCTACAATACTCTGAAGCT CCCAACATACAAAAGAGCCAGCACTTTGAGAGCAAAGCTTCTTTATGCTATCACTTCCAACACAGGATTTGAACTTTCTTAA
AA sequence Show only first row Show all	>Lus10008636 pacid=23180066 polypeptide=Lus10008636 locus=Lus10008636.g ID=Lus10008636.BGIv1.0 annot-version=v1.0 MDESRKHQVSSFFPFSLIRSCAVHLTIRFKSFGAFLDRFQVSLRGASAREISRDALLEKLSQERELRNYARRASAAAIFIQRVWRRYSLTKRIALQLQGE WEAVVNGHDGSRSAGWISGSVLRPFLFFVEVLSTRHQKVRTVDRNCIHSCFKILLESVNSTGKLIRTGSKCVMYGIIWSYMCFAVYGYVNDLAKKGTSAT VTYSRNNICSLALGTLDERRTWTYQIRKLISLCSFVLSECDRTIARGRDIITLASLGMRILVVLSDQKGWKSIATGGSEDAETAVKHLIRFIGSPESGFY RSLRRYIERLEMPIQSQAKKVTQTDDLFLVTASAVTLALRPFHATNSDSNGSGLLDTHFAVMHYSLSLLTIPQLTKRLPVVLLPAVKHKTVLSPCLKTML ILGDDIFTEMARMDYLEVPHSTIVIPPVGWTLANIVCLAASTEKDFTGPGGIFQDTDYVFYVRVVAKLSDNLLSWFSDGGWSEHQDPQVNAETSVKPVNF FHENEVAQALITSYVELLKPIFQQWHLKKLLSVTKTAASSESSSPSCPRALELIDIAYFYAYMLRIFSVLNPMGALPVLNMLSFTPGFLVSLWLALESSL FPGQISVGNDAYSSRTSKNAKVDVLEKKQKPPNKDRGSKWGNVLNRMTSKPQEGYVAVSTSDGLPSYEVIEEGNDIWNVETLKYGPAKVTNDLSCLLHLF CATYSHMLLVLDDLDFYEKQVPFSLEQQRTIASALNTLVYNSFVNNNSQHNRPLVDSAIRCLHLLYERDCRHQFCPPSLWLSPAKRSRPPIAIAARTHEI MLTNVRSDDAMTSPVLSSVRFSLLIGRVEMFREFVNRDKASRRMAGEVTEPGSRAVEIVVRRGHIVEDGYRQLNYLGPRLKSSIHVSFVSESGLPEAGLD YGGLSKEFLTDISKTAFSPEYGLFSQTSTSDRLLVPNPAARYLENGTQMIEFLGRVVGKALYEGILLDYSFAHVFVQKLLGRYSFLDELSTLDQELYRNL MYVKMCLLQHYDGDVKELLLDFTVTEESFGKMHVIELKPGGKDISVTNENKMQYVHAMADYKLNRQILAFSNAFYRGLTDLISPPWLKQFNAREFNQVIK GFQPNERCLLLKFVTSCSRAPLLGFRHLHPSFTIHKVSCESSIWASIGGQDVDRLPSASTCYNTLKLPTYKRASTLRAKLLYAITSNTGFELS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	1.4	0.9669
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	1.4	0.9633
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	2.4	0.9582
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	2.6	0.9572
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	4.0	0.9560
					Lus10005872 [exp]	4.5	0.9607
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	4.7	0.9501
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10015838 [exp]	7.3	0.9215
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	7.5	0.9370
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	7.9	0.9613

Compare expression of checked genes

Lus10008636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.