Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03800 886 / 0 EMB166, EMB175, EMB1899 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 443 / 9e-142 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 440 / 6e-141 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 444 / 4e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 436 / 4e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 436 / 4e-139 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 432 / 2e-138 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 429 / 6e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 433 / 9e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 425 / 5e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035587 [exp] 1126 / 0 AT5G03800 630 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 455 / 2e-145 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 452 / 2e-144 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 441 / 2e-141 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 435 / 1e-138 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 432 / 1e-137 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 429 / 2e-136 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 422 / 8e-135 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015225 [exp] 424 / 2e-134 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096400 [exp] 1028 / 0 AT5G03800 993 / 0.0 embryo defective 1899, EMBRYO DEFECTIVE 175, EMBRYO DEFECTIVE 166, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 488 / 2e-158 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 474 / 6e-154 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 454 / 1e-146 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 453 / 1e-146 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 451 / 4e-145 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 446 / 7e-142 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 445 / 1e-141 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 432 / 2e-139 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G044700 [exp] 430 / 8e-138 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008637 pacid=23180080 polypeptide=Lus10008637 locus=Lus10008637.g ID=Lus10008637.BGIv1.0 annot-version=v1.0 ATGATTCAATCCTCCGCCGTCACAACCATCTCCCCGCCGCTGCTAACCCTAAAGTCCTTCCACTTCCGCTCCAAGCTACCAATTGCACCACCGTCAGCTC CAACCCGCTCCGCTGGCGAGGTCAAACTTCATTGCTTTTACGCCACTTCAGTCCAGCCTCGATTGCCGAGTCACCCTAGTTTCCTTCCTATTGATTCTTC GAATGGACGGAGTCCGGAACCCGGCGATGCTGATTATTACGCTTACGTTGCCAACGTGCGGTACTTGCTTCGGCTTTCGATCAAATACTCCGATATCGAG CTCGCCAAAGCGGTCCACGCTTCGATTCTCAAGCGCGAAGCAGACACTTATCTGGGGAATTGTCTCATCGGAGTTTACATCAAGCTGGGCCTTGTTCTCG ATGCGTATCAGGTATTTAAGAACCTTTCTCAACCCAACGTGGTTTCGTACAGTGCACTGATTTCGGGGTTTTCCAAGTCGAATCGAGAAGCTGAAGCTCT GGAACTCTTCTTTAGGATGAGGAATTCGGGCGTTGAGCCTAACGAGTACAGTTTTGTTGCTATACTGACTGCTTGTATTAGGGTTTTGGGTTTGGAATTG GGGAGAGAAGTTCATGGTTTGGCGGTGAAGTCGGGGGTTTTAGGATGCGTCTTTGTGGCTAATGCGGTAATGGCATTGTATGGGAAATACGGGCGTTTGA ACTCTGCAATCCAACTGTTCGACGAAATGCCTGATAGAGACATCGCTTCGTGGAACACGGTGATTTCTAGTTCAGTGGCTGAGTCATTGTATGAGAAGGC TTTGGATATCGGTCGAGAGTTGGGGCAGCAGATTGATGATGTTAAAGTTGACGAATTCACTCTCTTGACACTCTTAACTGCATCTACTCATTCCCATGCA ATTAATGAAGGTAAGGAGATTCATGGCCGTGCCATTAGACTTGGTTTCCTAATGGGTAGTTTGGATCTTTGCAATATCTTGATTGGGTTTTATGCCAAAT GTGGAAGTTTGAGAGATGTGCTGACTGTATTTGAGAGGATGCCAATCAGAGATGAAGTAACTTGGGCACAGCTGATCACTGCATATATGGAATCTGGACT GGTGGCCAAGGCTGTGGAGACATTTGAGAACATGCCCGAGTCTGAGAGAAGCTCCATCTCTTACAATGCTATTTTGGCAGGGTTTATCCACAACGCAGAA GGATTGAATGCGCTGAATTTCTTCATGATGATGATCCATAACGGCATAGAGCTCTCTGATTTCAGCTTAACCCGCATTGTAACTGCATGTGGATTGATGG CAGACATTGAAATCAGTAAGCAAGTCCATGGCTTCGTCACCAAGTTTGGCCATGGTTCAAATGCTTATATCGAAGGGTCTTTGTTAGATATGTACACAAG GTGCGGAAGAACGAAGGATGCAGAGAAACTGTATCAGGAAACGCCATCCAACCAGGAAACACCAGCTGCTTATACCTCAATGCTAAGTGGGTACGCTCGA AACGGGCGGCCAGATAAGACGGTTGCTCTTTTCGTCCGCAGTTTATCAGAATCCACTTTGGTTATGGATGAACTCATACCCACCACAGTCCTCGAAGCTT GTGGGACTTTAGCCTTCCATGATCTGGGGACACAACTCCATTGTTATGTTCTTAAAGCAGGCTTCCAAGCTGATCTAGGCGTGGTGAACTCTCTCATCAA CATGTATTGCCAGTGCTTCAACATGAACACCGCCATCAGACTATTCGAAGCCATGGCTTCTCGTGACGTGGTTTCGTGGAACACTCTGTTAGCAGGCCAT GTCCTCCACAGACAAGGCGACGAGGCTCTACTTCTCTGGTCAAGAATGCAAAGGTCAGGAGTAAGACCAAACTCCATTACCTTTGTTTCAATCATTTCAG CCTACAGCCATACGTCATCCAACTTAGTCCACCAATGCCGTACGATGTTCCAATCAATGAAGCCAATGTACAATGTTGAGCCAACTTCAGAACACTACGC ACCATTCGTCGGCGTCCTTGGTTCCTGGGGACTCCTCCAAGAAGCAGAACAGACAATCCTGAACATGCCATTTGAACCTGAAGCCAATGTATGGCGAGCT TTACTCAACAGCTGCAGGATACAGGTGAACTCGGATGTCGGAAGAAGAGTTGCGAAACGAATCCTGGAAATGGAGCCGAAGGATCCATCCACATTCGTCC TCATCTCGAATCTCTACTCTGCATCAGGAAGATGGCACTGCGCTGAATCGACGAGACAGAAAATGAAAGAAAAGAAGATGTTCAAGAACCCATGCAAGAG CTGGATCATCCACGATAACAAGCTCCATTCTTTCTACGTTCGCGACAGGTATCATTCTCAATCCAAGGACATCTACAGTGGACTGGAGATTCTGATAATG GAGTGCATGAAATCCGGGTACAAACCGGACACCAGCTTTGTACTGCACGAGGTGGAAGAGTACCAGAAGAAGGAGTTCTTGTTCTACCACAGTGCGAAGC TAGCTGCTACTTATGGCCTTCTGATGACGAAGCCACCAGAGATAGTTAGAATCGTGAAGAATGTTCATGTCTGTGGGGACTGCCATAACTTTCTGAAGCA TGTCTCTGCTGTCTCCAGGAGGGAGATACTGTTAAGAGATGCTTCTGGGTTCCATTTCTTCTCTGATGGCCATTGTTCTTGCAATGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10008637 pacid=23180080 polypeptide=Lus10008637 locus=Lus10008637.g ID=Lus10008637.BGIv1.0 annot-version=v1.0 MIQSSAVTTISPPLLTLKSFHFRSKLPIAPPSAPTRSAGEVKLHCFYATSVQPRLPSHPSFLPIDSSNGRSPEPGDADYYAYVANVRYLLRLSIKYSDIE LAKAVHASILKREADTYLGNCLIGVYIKLGLVLDAYQVFKNLSQPNVVSYSALISGFSKSNREAEALELFFRMRNSGVEPNEYSFVAILTACIRVLGLEL GREVHGLAVKSGVLGCVFVANAVMALYGKYGRLNSAIQLFDEMPDRDIASWNTVISSSVAESLYEKALDIGRELGQQIDDVKVDEFTLLTLLTASTHSHA INEGKEIHGRAIRLGFLMGSLDLCNILIGFYAKCGSLRDVLTVFERMPIRDEVTWAQLITAYMESGLVAKAVETFENMPESERSSISYNAILAGFIHNAE GLNALNFFMMMIHNGIELSDFSLTRIVTACGLMADIEISKQVHGFVTKFGHGSNAYIEGSLLDMYTRCGRTKDAEKLYQETPSNQETPAAYTSMLSGYAR NGRPDKTVALFVRSLSESTLVMDELIPTTVLEACGTLAFHDLGTQLHCYVLKAGFQADLGVVNSLINMYCQCFNMNTAIRLFEAMASRDVVSWNTLLAGH VLHRQGDEALLLWSRMQRSGVRPNSITFVSIISAYSHTSSNLVHQCRTMFQSMKPMYNVEPTSEHYAPFVGVLGSWGLLQEAEQTILNMPFEPEANVWRA LLNSCRIQVNSDVGRRVAKRILEMEPKDPSTFVLISNLYSASGRWHCAESTRQKMKEKKMFKNPCKSWIIHDNKLHSFYVRDRYHSQSKDIYSGLEILIM ECMKSGYKPDTSFVLHEVEEYQKKEFLFYHSAKLAATYGLLMTKPPEIVRIVKNVHVCGDCHNFLKHVSAVSRREILLRDASGFHFFSDGHCSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10008637 [exp]	0	1
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	4.9	0.8686
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	6.5	0.8625
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	9.0	0.8797
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	9.8	0.8449
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	15.0	0.8706
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	19.5	0.8642
AT3G54190			Transducin/WD40 repeat-like su...		Lus10035613 [exp]	19.9	0.8160
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	23.5	0.8683
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	24.0	0.8198
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035588 [exp]	25.3	0.8493

Compare expression of checked genes

Lus10008637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.