Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36640 197 / 1e-57 ATECP63 embryonic cell protein 63 (.1) AT3G53040 149 / 2e-39 late embryogenesis abundant protein, putative / LEA protein, putative (.1) AT4G36600 78 / 2e-15 Late embryogenesis abundant (LEA) protein (.1) AT2G18340 66 / 3e-11 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1.2) AT5G44310 64 / 4e-11 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) AT2G42560 54 / 2e-07 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT4G21020 50 / 9e-07 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G72100 46 / 4e-05 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035586 [exp] 395 / 1e-134 AT2G36640 211 / 5e-64 embryonic cell protein 63 (.1) Lus10000723 [exp] 57 / 2e-08 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10021473 [exp] 50 / 3e-06 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060600 [exp] 212 / 2e-63 AT2G36640 200 / 2e-59 embryonic cell protein 63 (.1) Potri.001G173200 [exp] 42 / 0.0001 AT1G52690 58 / 2e-11 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) Potri.019G090300 [exp] 44 / 0.0003 AT2G42560 85 / 3e-17 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02987 [flax] [poplar] LEA_4 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10008638 pacid=23180054 polypeptide=Lus10008638 locus=Lus10008638.g ID=Lus10008638.BGIv1.0 annot-version=v1.0 ATGGCGTCGGAAAAGGAAAGGATGGAGAAGGCCGAGGAGGCGGCGTGGGAAGCTGCCTACAATCTAAGGGAAGTGAATCGCCAGAGAGATTACGAAGAGC GAGCTAAGACCGTTGAATCAAACATTGTTCCTCCGGCACTCGACAAAGACCATATGACATCCGGCGGTGGAGTACATCAAGACCAGCAGCCTGGAGTGTT CGGCTCAATGTTCCGGGCGGTGGCTGAAACTGTCGGCCATGCCAAGGATGCAGTGGCTGGAAAGGGGCGCGAGGCTGCTGATAAAACAAGTTCAGCTGCC GAAACGGTTGCGGAGAAGGCAGGGGAAACCAAGGAAGCCGCCAAGGAGAAGGCGTGGAAGACGAAGGATTACACAGCGGAGAAGGCTAACCAGGCGGCGG AGAAGGCAGTGGAGGTTAAAGATACGGCAAAGGAGAAGGCGAGGGAGAGGAAGGATTACACGGTGGAGAAGGCTAACCAGGCGGCGGAAAAGGCAGGGGA GGTGAAGGATGCGGCGAAGGATAAAGCGTGGGAGATAAAGGATAACGCGGCGGAGAAGGTCAATCGAGCTGCAGAGAAGGCAGGGGAGGTGAAGGATGCG GCTAAGGAGAAGGCTGGGGAGATAAAGGATAACGCGGCGGAGAAGGTCAATCGAGCTGCAGAGAAGGCAGGAGAAATGAAGGACGCGGCTAAGGAGAAGG CTGGGGAGACTAAGGATTACACGGCGGAGAAGGTGAACCAGGCGGCGGAGAAGGCCGGAGAGGTGAAGGATACTGCCAAGGGGAAAGCAGAGGAATACAA AAACTCTGCAGCTGAAAAGGCAAGGGAAACTAAGGATTACACGGCGGAGAAGGCAAACGAGGCGGCGGAGAAGGCGAAAGAGACGAAGGATTATACCGCC GAGAAGGCGAAAGAAGGGACGGAGACGGCGGGGAACAAGCTGGGAGGCGTTGCGAGGATGGCTATGGATTTCTTCTCCGGGAAGAAAGATAATGAAGAAA AGGCTGATGACAGAAACGCTACACGCGTAACTCAATCGATGATGGAGGAGAGGAGGAAGGAAGCTGAGGAGGAAACAAGGCGGAGAGTTGAAGAGCTAAA GCTTCAGGATGAAGCCGAGAAAGCCGACTACCAACGCAGAAAAGAGGAGGCTGAGAGGGGGAAGGCGGCGAGGGACAACATTTACGGGGGGGTGGGGCTG GGGACGATCGTGGAGTCTGTGAAGAGCAAGCTGACGAAGCCAGCCGACGTGGTGGAGGAGACGGTGGCCGCCAGGGAGCACGGCGGAACGGGAAGGGTCA GAGTGGATAGTCGGAAGGAGGAGGAGGAGGGTAAAATTCCGTTGGAGAAGACGCGGCCGGGAGCGGTGGCGGCGACGCTGAAGGCGGCGGATCAAATGAC CGGTCAGACTTTCAACGATGTTGGAAGGATGGGGGATGAGGGAGTTATACACGTGGAGGAGGCGGAGGAGGTGGTTCGGCGTAAGGGGAACTAG
AA sequence Show only first row Show all	>Lus10008638 pacid=23180054 polypeptide=Lus10008638 locus=Lus10008638.g ID=Lus10008638.BGIv1.0 annot-version=v1.0 MASEKERMEKAEEAAWEAAYNLREVNRQRDYEERAKTVESNIVPPALDKDHMTSGGGVHQDQQPGVFGSMFRAVAETVGHAKDAVAGKGREAADKTSSAA ETVAEKAGETKEAAKEKAWKTKDYTAEKANQAAEKAVEVKDTAKEKARERKDYTVEKANQAAEKAGEVKDAAKDKAWEIKDNAAEKVNRAAEKAGEVKDA AKEKAGEIKDNAAEKVNRAAEKAGEMKDAAKEKAGETKDYTAEKVNQAAEKAGEVKDTAKGKAEEYKNSAAEKARETKDYTAEKANEAAEKAKETKDYTA EKAKEGTETAGNKLGGVARMAMDFFSGKKDNEEKADDRNATRVTQSMMEERRKEAEEETRRRVEELKLQDEAEKADYQRRKEEAERGKAARDNIYGGVGL GTIVESVKSKLTKPADVVEETVAAREHGGTGRVRVDSRKEEEEGKIPLEKTRPGAVAATLKAADQMTGQTFNDVGRMGDEGVIHVEEAEEVVRRKGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Lus10008638 [exp]	0	1
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	15.7	0.5839
					Lus10003555 [exp]	36.3	0.5044
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	36.7	0.5442
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011287 [exp]	37.8	0.5430
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	48.6	0.5394
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10040501 [exp]	70.5	0.5185
					Lus10001476 [exp]	82.7	0.5038
					Lus10025477 [exp]	84.3	0.5078
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	102.6	0.4951
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	107.1	0.4820

Compare expression of checked genes

Lus10008638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.