Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03810 459 / 7e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 453 / 1e-160 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 414 / 2e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 412 / 1e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 385 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 262 / 4e-85 SGNH hydrolase-type esterase superfamily protein (.1) AT4G26790 260 / 1e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G04570 258 / 9e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 253 / 5e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 241 / 6e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035585 [exp] 610 / 0 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 603 / 0 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008635 [exp] 478 / 2e-170 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 454 / 6e-161 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 391 / 7e-136 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 390 / 2e-135 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 363 / 7e-125 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 270 / 1e-88 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 269 / 3e-88 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118300 [exp] 479 / 5e-171 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 435 / 2e-153 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 378 / 6e-131 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 322 / 2e-108 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 296 / 2e-99 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 261 / 1e-84 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 258 / 1e-83 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 254 / 4e-82 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 252 / 2e-81 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160100 [exp] 249 / 2e-80 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10008639 pacid=23180070 polypeptide=Lus10008639 locus=Lus10008639.g ID=Lus10008639.BGIv1.0 annot-version=v1.0 ATGGGAGTTGTTTGGGCTACTGGTTTGCTTCTGGTTCTCGCTCTAGTGTCTTCAATGGCTGCTGCTGATCCTCTCGTACCATCGCTCACCATCTTCGGCG ACTCGGTTGCTGACGTGGGGAACAACAACCACCTCATCACTCTCATCAGAGCAAATTTCCCTCCTTACGGAAGGGACTTTGCGGATCATAGACCGACCGG GAGGTTCAGCAATGGAAAGCTAGCTATAGACATCACCGCTGACTTTCTGGGGTTTAACACTTACCCACCACCCTATCTAAGCCAAGATGCCAAGAACTTG GCAAATGTTGTGACTGGAGTCAATTTCGCTTCCGGTGCTTCTGGTCTGCTCGATCGAACAGCCCACCTATATGGAGCTGTTTCATTGTCAAGGCAGCTGG AGAACTACAAGGAGTACAGAGAAACAGTCGAGAGCAAAGTCAGAACAGAGAACTCCAGCAACATATTCTCTAAAGGGATTCATCTCCTAAGCACCGGAAC CAGCGATTTCATCCAGAACTACTACATCAACCCTGTTCTCAAAGCTCTCTACACACCTGATCAGTTCTCAGACAAGCTCATGGAATCTTATGCCACCTTC ATTCAGAACCTGTACGGACTTGGAGCAAGAAGGATTGGAGTGACATCACTGCCACCAACAGGTTGCTTGCCTGCAGCCATTACCCTATTCGGCTTCGGGA GCAACGAATGCGTCGAGAGGCTCAACTGGGATGCAACTTCTTTCAACCAGAAGCTAAATGCAACCTCTCAGAGAATCGTGGAAGGACTCCCTGGTCTTAA AATTGTTGTGTTCGATATCTACAACCCGCTCTTGAACTTGATCAAGCATCCCAGTGACAACGGATTCGTCGAGGCGAGGAAGGCTTGCTGCGGGACTGGT GTCCTAGAGACTGCATTTCTATGTAATGCAATGTCGCCAGGGACATGCGCCAATGCTACCGAGTATGTGTTCTGGGACGGATTCCACCCTTCCGAAGCTG CCAACGGTGTCTTAGCTCAAGCCGTGCTTTCTCAAGGATTCGACCTCATATCGTAG
AA sequence Show only first row Show all	>Lus10008639 pacid=23180070 polypeptide=Lus10008639 locus=Lus10008639.g ID=Lus10008639.BGIv1.0 annot-version=v1.0 MGVVWATGLLLVLALVSSMAAADPLVPSLTIFGDSVADVGNNNHLITLIRANFPPYGRDFADHRPTGRFSNGKLAIDITADFLGFNTYPPPYLSQDAKNL ANVVTGVNFASGASGLLDRTAHLYGAVSLSRQLENYKEYRETVESKVRTENSSNIFSKGIHLLSTGTSDFIQNYYINPVLKALYTPDQFSDKLMESYATF IQNLYGLGARRIGVTSLPPTGCLPAAITLFGFGSNECVERLNWDATSFNQKLNATSQRIVEGLPGLKIVVFDIYNPLLNLIKHPSDNGFVEARKACCGTG VLETAFLCNAMSPGTCANATEYVFWDGFHPSEAANGVLAQAVLSQGFDLIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	0	1
					Lus10009206 [exp]	9.1	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	12.8	1.0000
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	13.5	0.9997
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	13.6	0.9997
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	14.0	0.9986
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	15.7	1.0000
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	17.3	0.9983
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	17.7	0.9978
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	18.1	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	20.2	1.0000

Compare expression of checked genes

Lus10008639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.