Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53020 198 / 1e-65 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 197 / 1e-65 RPL24A ribosomal protein L24 (.1) AT2G44860 74 / 3e-17 Ribosomal protein L24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035584 [exp] 212 / 3e-71 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10024560 [exp] 199 / 6e-66 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10032198 [exp] 198 / 8e-66 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10006314 [exp] 192 / 2e-62 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10029583 [exp] 192 / 3e-62 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1) Lus10014637 [exp] 81 / 3e-20 AT2G36620 100 / 6e-28 ribosomal protein L24 (.1) Lus10020552 [exp] 80 / 3e-19 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139400 [exp] 201 / 6e-67 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 201 / 6e-67 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 198 / 8e-66 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.004G085300 [exp] 197 / 2e-65 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 182 / 1e-59 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.009G148500 [exp] 76 / 9e-18 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 76 / 1e-17 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10008640 pacid=23180079 polypeptide=Lus10008640 locus=Lus10008640.g ID=Lus10008640.BGIv1.0 annot-version=v1.0 ATGGTGCTCAAGACGGAGCTCTGCAGGTTCAGTGGGCAGAAGATCTACCCAGGGAGAGGGATTAGATTCATTCGTTCTGACTCTCAGGTGTTCCTCTTTG CCAACTCAAAGTGCAAGAGGTATTTCCACAACAGGTTGAAGCCATCCAAGCTAACATGGACGGCTGTCTTCAGGAAGCAACATAAGAAGGATATTGCTCA AGAGGCAGTCAAGAAGAGGCGCAGGGCCACCAAGAAGCCTTACTCCAGGTCCATTGTTGGTGCAACCTTGGAGGTTATCCAGAAGAAGAGAACCGAGAAA CCCGAAGTTCGTGATGCTGCTAGGGAAGCTGCGATCAGAGAAATCAAGGAAAGAATCAAGAAGACTAAAGACGAGAAGAAGGCCAAGAAAGTAGAAGTGA GCAAGTCCCAGAAGTCTCAACCGAAAGGTGGTGCTGGAAGGGCTGCCCCGGCCAAGGGTCCTAAGCTTGGTGGTGGCGGTGGAAAGCGCTGA
AA sequence Show only first row Show all	>Lus10008640 pacid=23180079 polypeptide=Lus10008640 locus=Lus10008640.g ID=Lus10008640.BGIv1.0 annot-version=v1.0 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAVFRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEK PEVRDAAREAAIREIKERIKKTKDEKKAKKVEVSKSQKSQPKGGAGRAAPAKGPKLGGGGGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10008640 [exp]	0	1
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	1.7	0.9131
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	2.8	0.8798
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	4.5	0.8556
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	6.2	0.8723
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	8.7	0.8659
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031706 [exp]	9.5	0.8516
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	10.6	0.8506
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	10.6	0.8485
AT4G02610			Aldolase-type TIM barrel famil...		Lus10018760 [exp]	14.5	0.7373
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	14.8	0.8361

Compare expression of checked genes

Lus10008640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.