Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03790 142 / 1e-41 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT2G36610 127 / 2e-36 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1) AT1G69780 105 / 8e-27 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G22430 103 / 5e-26 HD ATHB6 homeobox protein 6 (.1) AT4G40060 101 / 3e-25 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT3G01470 100 / 5e-25 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G65310 100 / 1e-24 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT5G15150 99 / 2e-24 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT4G36740 96 / 1e-23 HD HB-5, ATHB40 homeobox protein 40 (.1) AT3G01220 96 / 4e-23 HD ATHB20 homeobox protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035583 [exp] 321 / 9e-112 AT5G03790 146 / 2e-43 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10013277 [exp] 101 / 2e-25 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10012845 [exp] 100 / 5e-25 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 100 / 5e-25 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10042180 [exp] 101 / 6e-25 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 100 / 6e-25 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 100 / 9e-25 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10030214 [exp] 98 / 5e-24 AT2G46680 208 / 5e-67 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10037218 [exp] 98 / 7e-24 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117700 [exp] 219 / 1e-71 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Potri.005G071900 [exp] 108 / 1e-27 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 106 / 1e-26 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.008G194400 [exp] 103 / 6e-26 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.015G065400 [exp] 103 / 8e-26 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 101 / 2e-25 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.010G093400 [exp] 101 / 3e-25 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.012G070900 [exp] 100 / 2e-24 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G148200 [exp] 99 / 2e-24 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.014G103000 [exp] 98 / 2e-24 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10008641 pacid=23180091 polypeptide=Lus10008641 locus=Lus10008641.g ID=Lus10008641.BGIv1.0 annot-version=v1.0 ATGGATTGGAATAATCATGGCAATTTGAGAAATAACGTTTCTTCTTCTCGTCCCCAAGACACTTCTTCCTTCAACTTCTTCTACGACCACTTTCCAGGAA TGGATATGAAGCAGCGAGGGGAAACGGCGGCGTATCATCACCAGCAGCAACAAGGCATTAGCATGAGTCCGGCAACTTCGTCCGAGAAGACGATGAGCTA TGGAAGCAGCTGCAGTAGCTACGCGGCAAACCAGCAGCATCAGATGATGATGATGATGGATCAGAAGAAGAAGCGGCTGACGAACCATCAGCTCGAATCT CTCGAGACAAGCTTCCAGGAGGAGATCAAGCTTGAACCCGACAGGAAAATGAAACTCTCCAGCGAACTCGGTCTCCATCCGAGGCAGATTGCCGTGTGGT TCCAGAACCGTAGAGCTCGCTGGAAGGCCAAGCAGCTCGAGCGCCTCTACGATTCCTTGAAGCTCGAGTTCGACACCGTTTCCAAGGAGAAGCACAAGCT CCAGGAAGAGGTGATGAAATTGAGAGGAATGCTGGGAGAGCAAGGAGGGACCAGGAACAAACATCATGGGTCGATGGCAGTGTACACAGACATCTCTGGT GACGAGACGATGGAGAGCACGCCGGTGACAATCAACCGAAGTGGATCAAGGAAGATGTCCGCAATCGGTCAACATCAGATGTTGATGACGAGGACTGAAA ACAGTCATCATATGGTTGTGGATGAATACAACCCATCAGTAGCAGTACCTACCCCAACTTATTGGAGTGTCCTCCCTTCTTATAATCCTTAG
AA sequence Show only first row Show all	>Lus10008641 pacid=23180091 polypeptide=Lus10008641 locus=Lus10008641.g ID=Lus10008641.BGIv1.0 annot-version=v1.0 MDWNNHGNLRNNVSSSRPQDTSSFNFFYDHFPGMDMKQRGETAAYHHQQQQGISMSPATSSEKTMSYGSSCSSYAANQQHQMMMMMDQKKKRLTNHQLES LETSFQEEIKLEPDRKMKLSSELGLHPRQIAVWFQNRRARWKAKQLERLYDSLKLEFDTVSKEKHKLQEEVMKLRGMLGEQGGTRNKHHGSMAVYTDISG DETMESTPVTINRSGSRKMSAIGQHQMLMTRTENSHHMVVDEYNPSVAVPTPTYWSVLPSYNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	2.8	0.9463
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	4.2	0.9303
AT1G33500			unknown protein		Lus10013776 [exp]	4.7	0.8760
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	5.1	0.9422
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023905 [exp]	5.5	0.8965
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	6.0	0.9349
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	6.9	0.9273
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	7.1	0.9352
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	8.5	0.8465
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	8.7	0.9304

Compare expression of checked genes

Lus10008641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.