Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53000 434 / 1e-154 ATPP2-A15 phloem protein 2-A15 (.1) AT3G61060 305 / 4e-104 ATPP2-A13 phloem protein 2-A13 (.1.2) AT1G12710 285 / 5e-96 ATPP2-A12 phloem protein 2-A12 (.1) AT5G52120 263 / 3e-87 ATPP2-A14 phloem protein 2-A14 (.1) AT1G63090 258 / 2e-85 ATPP2-A11 phloem protein 2-A11 (.1) AT2G02240 107 / 6e-27 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02360 105 / 2e-26 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 102 / 4e-25 ATPP2-B2 phloem protein 2-B2 (.1) AT1G09155 100 / 9e-25 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02310 98 / 2e-23 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024494 [exp] 281 / 4e-94 AT1G12710 377 / 6e-132 phloem protein 2-A12 (.1) Lus10029593 [exp] 276 / 3e-92 AT1G12710 398 / 2e-140 phloem protein 2-A12 (.1) Lus10027423 [exp] 263 / 3e-87 AT3G61060 320 / 1e-109 phloem protein 2-A13 (.1.2) Lus10005769 [exp] 258 / 4e-85 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10020674 [exp] 110 / 2e-28 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 104 / 6e-26 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10008898 [exp] 102 / 3e-25 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 100 / 2e-24 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020673 [exp] 99 / 9e-24 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117600 [exp] 468 / 4e-168 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.014G075800 [exp] 316 / 2e-108 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.015G138600 [exp] 307 / 1e-104 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.001G109800 [exp] 307 / 1e-104 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.003G121900 [exp] 303 / 4e-103 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.012G136200 [exp] 301 / 2e-102 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.018G016100 [exp] 102 / 4e-25 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 101 / 8e-25 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 100 / 9e-25 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G267000 [exp] 92 / 2e-21 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008642 pacid=23180093 polypeptide=Lus10008642 locus=Lus10008642.g ID=Lus10008642.BGIv1.0 annot-version=v1.0 ATGGGTGCGTCGCTGTCGAACTTGACGGAAGGTGCGAACGGAGGTGGTGAGGCCAGAGGGCCGGGATTGGGGGACATACCGGAGAGCTGCGTGGCCTGCG TCTTCACCTACCTCACGCCGCCGGAGATCTGCAATCTCGCCAGGCTGAACCGCGCTTTTCGCGGCGCTGCTTCGTCGGACTCCGTATGGGAGATGAAGCT ACCTCGGAACTACCGAGATCTGCTCGATTTGCTGCCTCCCGAACGGCACAGGGACTTTCCGAAGAAGAAGGACATCTACGCCCTCCTCTCCAGGCCCGTC CCCTTCGACGATGGGAATAAAGAGCTATGGTTGGATAGAGTTACGGGGAGGGTTTGTGTGTCCGTATCGGCGAAGAGTATGTCGATAACCGGGATCGAGG ACCGGAGGTATTGGAATTGGGTTGATACTGAAGAATCCAGATTCCACGTCGTTGCATATCTGCAGCAAATATGGTGGTTCGAAGTAGATGGGGTTGTAAA GTTTCCTTTCCCTCCTGATGTCTATACACTAACCTTTAGGCTTCACCTCGGAAGATTTGCCAAACGGCTAGGACGGCGTGTATCTAACTTCGACCACACG CATGGTTGGGATATAAAGCCAGTACGCTTCGAGTTGTCAACGTCAGACGGTCAGCAGGCAACATCTGAATGCTGCTTAGACGACACTGAACTCGACGAAG AGTATGGCGCCCACAAGCGTGGATACTGGATAGAGTACAAAGTGGGGGATTTCACCGTGACTGACTTGGATCCCACCACCGAGGTCCGATTCTCCATGAA ACAGATTGACTGCACGCATTCGAAAGGTGGGCTTTGTGTAGACTCTGTATTTATTACACCCAGTGATCTCAAGGAGCGTAGAAGAAAAGGTGTGATTAAG TAG
AA sequence Show only first row Show all	>Lus10008642 pacid=23180093 polypeptide=Lus10008642 locus=Lus10008642.g ID=Lus10008642.BGIv1.0 annot-version=v1.0 MGASLSNLTEGANGGGEARGPGLGDIPESCVACVFTYLTPPEICNLARLNRAFRGAASSDSVWEMKLPRNYRDLLDLLPPERHRDFPKKKDIYALLSRPV PFDDGNKELWLDRVTGRVCVSVSAKSMSITGIEDRRYWNWVDTEESRFHVVAYLQQIWWFEVDGVVKFPFPPDVYTLTFRLHLGRFAKRLGRRVSNFDHT HGWDIKPVRFELSTSDGQQATSECCLDDTELDEEYGAHKRGYWIEYKVGDFTVTDLDPTTEVRFSMKQIDCTHSKGGLCVDSVFITPSDLKERRRKGVIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	0	1
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	6.2	0.8578
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	6.4	0.8616
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	6.6	0.8575
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	9.5	0.8469
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	10.4	0.8583
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	11.0	0.8319
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	14.3	0.8267
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	15.0	0.8387
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	17.3	0.8109
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	20.3	0.8315

Compare expression of checked genes

Lus10008642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.