Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10040 226 / 6e-69 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 195 / 2e-57 Trihelix unknown protein AT1G21200 164 / 3e-45 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G33240 43 / 0.0006 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035582 [exp] 690 / 0 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10029777 [exp] 174 / 7e-49 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 168 / 8e-47 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 165 / 2e-46 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 165 / 3e-46 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096300 [exp] 407 / 2e-138 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 405 / 3e-137 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 176 / 1e-49 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.002G068700 [exp] 171 / 8e-48 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 167 / 2e-46 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 162 / 1e-44 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008643 pacid=23180067 polypeptide=Lus10008643 locus=Lus10008643.g ID=Lus10008643.BGIv1.0 annot-version=v1.0 ATGGAACAGAATGGGTTGTTTTCAGGAAGCGGGATAACATCGTCTTCAGCAGCAATGCTAGGTCTAGATATTTCACTTCACCAGCAACAAATCCCTCAAA ATAACCCTCCCCCACAACAGCAGCAGCACAATTTCCACCACCACAATCCTCCAATGGCGGCTCCTGCTGCTGCAGCAGCAGCATATGCTCCTCCCCAGCT TCAACCTGCTGTTAAATTACAGAATCAATACCCACCATTTGCAGCTTCTTCACACCCCAAATCACCACTGAGTGATGACGATGACTGCGTTGGAGATGAT GGTGGCGATCCCAAGAAAAAGATGTCTCCATGGCACAGGATGAAGTGGACTGACGGAATGGTGAGGCTTCTAATCATGGCTGTTTACTACATCGGTGACG AAGTTGGGACCGAGGGGAGTGATCCTGTTGTGTCTAATTCGGGTTCTGGGAAGAAGAAGCAATCAGGTGCAGGGCTGTCACAGAAGAAAGGGAAGTGGAA GTCTGTGTCAAGGGCTATGCTTGAAAAAGGGTACTATGTGTCTCCACAGCAGTGTGAGGACAAATTCAATGACTTGAACAAGAGGTACAAGAGGGTCAAC GATATTCTCGGAAGGGGAACTGCCTGCAAAGTTGTGGAGAATCAGGCTTTACTTGATACTATGGATCTTTCGCCGAAGATGAAGGAAGAAGTGAGGAAAC TGTTGAGCTCTAAGCACTTGTTCTTCAGGGAAATGTGTGCTTATCACAATAGCTGCGGCCACGGACCGGCATCTGGTGATGCTACTCATCAGCAGCATCA GCATCATCCTCAGCAGGGTTCTTCTCAAGTGCTTCAACAACATAAGTGTTCCCATACCGAGAACAGCGGCCACATGGTTGCGAATTCGATGGCTGGGAAG AGGGTAACCAACGAAGAAGATGACGATGATGATGAGGATGAAAGCCACGATGACGAGTATGATGATGATGAAGACTACGAGGATGGAGCAGAAGGGCATT CACGAGGCCAGAACAGCAATGCAAGCCATGGACACGAAGAAGACGGCCACGATACACACAAAAGGCCGAGAAGAACAGTAGCGGACATGATGATGTCATC AACAATGCAGGAATTCAACGGGGAATTGATGGGTGTAGTGCAGGACGGGGCGAAGAGTCCATGGGAGAAGAAGCAGTGGATGAGGATGAGGTTGATGCAG CTGGAAGAACAGCAGGTGAGTTACCAGGCCAAGTCGTTGGAGATCGAGAAGCAAAGGATGAAGTGGGTGAAGTTTGCTGGTAAGAAGGAGAGGGAAATGG AACGAGCGAAGCTGGAAAACGAGAGGAAGAGGATCGAGAACGAGAGGATGATGCTGTTTGTGAGGCAGAAGGAGCTTGATCTGCAACATCAACAGCAGCA GCAGCAGCAGCATTGTTCTAACAGGAGAAGTGATCCTTCTTCTCTTACTGGATGA
AA sequence Show only first row Show all	>Lus10008643 pacid=23180067 polypeptide=Lus10008643 locus=Lus10008643.g ID=Lus10008643.BGIv1.0 annot-version=v1.0 MEQNGLFSGSGITSSSAAMLGLDISLHQQQIPQNNPPPQQQQHNFHHHNPPMAAPAAAAAAYAPPQLQPAVKLQNQYPPFAASSHPKSPLSDDDDCVGDD GGDPKKKMSPWHRMKWTDGMVRLLIMAVYYIGDEVGTEGSDPVVSNSGSGKKKQSGAGLSQKKGKWKSVSRAMLEKGYYVSPQQCEDKFNDLNKRYKRVN DILGRGTACKVVENQALLDTMDLSPKMKEEVRKLLSSKHLFFREMCAYHNSCGHGPASGDATHQQHQHHPQQGSSQVLQQHKCSHTENSGHMVANSMAGK RVTNEEDDDDDEDESHDDEYDDDEDYEDGAEGHSRGQNSNASHGHEEDGHDTHKRPRRTVADMMMSSTMQEFNGELMGVVQDGAKSPWEKKQWMRMRLMQ LEEQQVSYQAKSLEIEKQRMKWVKFAGKKEREMERAKLENERKRIENERMMLFVRQKELDLQHQQQQQQQHCSNRRSDPSSLTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	1.0	0.9835
AT4G10265			Wound-responsive family protei...		Lus10018533 [exp]	3.5	0.9695
AT4G24110			unknown protein		Lus10001676 [exp]	4.6	0.9656
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	4.6	0.9293
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028470 [exp]	4.7	0.9293
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	5.7	0.9504
AT4G10270			Wound-responsive family protei...		Lus10039752 [exp]	5.9	0.9527
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	6.5	0.9423
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	6.7	0.9555
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	7.2	0.9629

Compare expression of checked genes

Lus10008643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.