Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52990 967 / 0 Pyruvate kinase family protein (.1.2) AT2G36580 961 / 0 Pyruvate kinase family protein (.1) AT5G56350 381 / 2e-127 Pyruvate kinase family protein (.1) AT5G63680 377 / 8e-126 Pyruvate kinase family protein (.1) AT5G08570 374 / 2e-124 Pyruvate kinase family protein (.1) AT4G26390 370 / 3e-123 Pyruvate kinase family protein (.1) AT3G04050 350 / 4e-115 Pyruvate kinase family protein (.1) AT3G55650 350 / 5e-115 Pyruvate kinase family protein (.1) AT3G25960 349 / 5e-115 Pyruvate kinase family protein (.1) AT3G55810 315 / 1e-101 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035581 [exp] 1060 / 0 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2) Lus10017364 [exp] 392 / 2e-131 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 387 / 1e-129 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 382 / 2e-127 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 381 / 3e-127 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 378 / 4e-126 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 358 / 6e-118 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 347 / 8e-114 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 249 / 8e-79 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117400 [exp] 994 / 0 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 889 / 0 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 882 / 0 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.001G001600 [exp] 396 / 4e-133 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 394 / 3e-132 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 382 / 1e-127 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 379 / 8e-126 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 374 / 1e-124 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 372 / 7e-124 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.003G088700 [exp] 177 / 9e-49 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10008644 pacid=23180056 polypeptide=Lus10008644 locus=Lus10008644.g ID=Lus10008644.BGIv1.0 annot-version=v1.0 ATGCATTCCAATCACTTGCTCCTCGAGGAGCCGATCCGCATGGCTTCAATCCTCGAGCCTTCCAAGTCTAGTTTCTTCCCGGCAATGACGAAGATTGTCG GGACTCTCGGTCCAACCTCCCGATCTGTGGAGACTATTTCTCGCTGCCTCAACGATGGAATGTCAGTGGCTCGATTTGATTTCTCCTGGGGTGACGCTGA GTATCACCAGCAGACTTTGGAGAACATGAAGGCTGCTATCAAGAGCACCAGGAAGCTCTGCGCTGTTATGCTCGACACCGTTGGTCCTGAGCTGCAGGTT GTTAACAGAAGTGAGAAACCTATCTCGCTTCAGGCAGATGGTCTTGTTGTCCTGACACCGGATACTGAACAGGATGCGTCTTCAGAATTATTGCCCATTA ACTTCGATGGACTCTCTAAGGCTGTGAAGCCCGGAGATACCATTTTCGTTGGACAATATCTCTTCACTGGTAGTGAAACTACTTCCGTTTGGCTGGAGGT CTCTGAGGTTAAAGATAATGATGTAGTTTGTGTCATAAAGAATACTGCTACACTGGCAGGGTCATTGTTCACTCTACATGCTTCTCAACTCCGCATTGAA CTACCTACCCTTTCCGCAAAGGATAAGGAGGCATGTGTTATTAGTACCTGGGGAGTCCCAAACAAAATTGACTTCCTTTCACTGTCCTATACCCGGCATG CAGAAGATGTCCGTCAGGCCCGCGAATATCTCTCCAAGTGTGGTGATCTAAGCCAAACGCAGATTTTTGCCAAGATCGAGAATGTGGAGGGGTTGACCCA TTTCGACGAGATATTACAAGCGGCTGATGGCATTATTCTTTCCCGTGGGAACTTGGGCATAGATCTCCCCCCTGAGAAGGTGTTTTTGTTTCAGAAGGCT GCCCTTTACAAGTGTAACATGGCTGGCAAGCCTGCTGTGGTCACTCGTGTTGTGGATACTATGACCAACAACTTGAGGCCAACTCGTGCTGAAGCAACAG ATGTTGCCAATGCTGTTCTTGACGGGAGTGATGCAATTCTTCTTGGTGCTGAGACTTTCCGTGGATTATACCCTGTAGAAACCATTTCTACTGTCGGCCG CATTTGTTGCGAGGCAGAGAAGGTTTTCAATCAGGATGTGTATTTCAAGAAAACTGTCAAATATGTTGGAGAGCCGATGACTCACTTGGAATCGATTGCT TCCTCTGCGGTTCGAGCGGCCATCAAGGTGAAGGCATCTGTCATCATATGCTTCACTTCATCTGGAAGGGCTGCTAGATTGATCGCCAAGTATAGGCCAA CGATGCCAGTTATATCCGTTGTCATCCCCAGACTCAAAACAAACCAGCTCAAGTGGAGTTTCACTGGTGCCTTCGAGGCAAGGCAATCACTCATAGTCAG AGGCCTCTTCCCAATGCTAGCCGATCCAAGACATGCGGCCGAGTCGACAAGCGCAACCAACGAATCGGTCCTTAAGGTGGCGCTGGACCACGGGAAGGCC TCGGGGGTGATCAAGTCCCACGACAGGGTAGTCGTGTGCCAGAAAGTCGGAGACGCTTCAGTGGTTAAGATCATCGAGCTCGAAGATTAG
AA sequence Show only first row Show all	>Lus10008644 pacid=23180056 polypeptide=Lus10008644 locus=Lus10008644.g ID=Lus10008644.BGIv1.0 annot-version=v1.0 MHSNHLLLEEPIRMASILEPSKSSFFPAMTKIVGTLGPTSRSVETISRCLNDGMSVARFDFSWGDAEYHQQTLENMKAAIKSTRKLCAVMLDTVGPELQV VNRSEKPISLQADGLVVLTPDTEQDASSELLPINFDGLSKAVKPGDTIFVGQYLFTGSETTSVWLEVSEVKDNDVVCVIKNTATLAGSLFTLHASQLRIE LPTLSAKDKEACVISTWGVPNKIDFLSLSYTRHAEDVRQAREYLSKCGDLSQTQIFAKIENVEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKA ALYKCNMAGKPAVVTRVVDTMTNNLRPTRAEATDVANAVLDGSDAILLGAETFRGLYPVETISTVGRICCEAEKVFNQDVYFKKTVKYVGEPMTHLESIA SSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPRLKTNQLKWSFTGAFEARQSLIVRGLFPMLADPRHAAESTSATNESVLKVALDHGKA SGVIKSHDRVVVCQKVGDASVVKIIELED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52990			Pyruvate kinase family protein...		Lus10008644 [exp]	0	1
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	1.0	0.9737
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	4.9	0.9363
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	5.1	0.9446
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	9.2	0.9283
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	10.8	0.9154
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	13.9	0.9296
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	14.7	0.9260
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10041739 [exp]	17.9	0.9012
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10021777 [exp]	24.2	0.9114
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	24.7	0.8860

Compare expression of checked genes

Lus10008644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.