Plant FIBer expression Database

Lus10008645 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033878
[exp]
63 / 1e-11 AT5G59540 308 / 4e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Lus10027424
[exp]
50 / 1e-07 ND /
Lus10012326
[exp]
40 / 0.0003 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10008645 pacid=23180087 polypeptide=Lus10008645 locus=Lus10008645.g ID=Lus10008645.BGIv1.0 annot-version=v1.0
ATGCTTGCTTTTATTTGGTTAGAAGCCGTACTGGATCTGACTTTTGCAGCATCAGGAAGTCCTATTCCTCTGATTCACTATCTAGATACTAGAGAAGATG
CTTTTGCCTCCCAACTTAGATCTTGGTTCCCTGCAACTAAGCCTATCTGGGTTCTCAATTATGTGAAGGGAAATTATCTTGTTATCTCTTGTAAACGAGA
AGGGCCCCCTCCCCACAACCCTAGCCGCCTCCCCGTACTCACAACATCCACCATGGCCGCCCTACACCCGTGTGCTTCCAACAGAGCCATCCTCACTGAC
GTCTCTAGCACCGCTGACGTCGCCATCGTCATCGGCGTCTTCAACACCGCCAACATCGCCATCACCGCCAACGTCGTCATCGTTGCAATTGCTATGCCGA
TTATCACCGTCGTTGCTGCACCCCCTATCCCCTTCCAAGAAGCACGACCAGGACATCATCCCTGCGTCATCAGTTGGTCAGTCAAGGGTGAACGGTCCAG
TTCATTGAACCTAAGAGTTGGAGCGGGTAAGGTCTTAGCCTCCCTTAGGAGTTCAAATAGGAATGTTGCTAATCGCATCCAAGTTTGCTAG
AA sequence
>Lus10008645 pacid=23180087 polypeptide=Lus10008645 locus=Lus10008645.g ID=Lus10008645.BGIv1.0 annot-version=v1.0
MLAFIWLEAVLDLTFAASGSPIPLIHYLDTREDAFASQLRSWFPATKPIWVLNYVKGNYLVISCKREGPPPHNPSRLPVLTTSTMAALHPCASNRAILTD
VSSTADVAIVIGVFNTANIAITANVVIVAIAMPIITVVAAPPIPFQEARPGHHPCVISWSVKGERSSSLNLRVGAGKVLASLRSSNRNVANRIQVC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10008645
[exp]
0 1
AT1G33470 RNA-binding (RRM/RBD/RNP motif... Lus10013781
[exp]
3.3 0.7814
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Lus10030202
[exp]
9.5 0.7399
AT1G72880 Survival protein SurE-like pho... Lus10008390
[exp]
14.5 0.7290
AT4G14350 AGC (cAMP-dependent, cGMP-depe... Lus10021176
[exp]
18.7 0.7239
AT3G10760 GARP Homeodomain-like superfamily p... Lus10038996
[exp]
26.7 0.6803
AT5G42620 metalloendopeptidases;zinc ion... Lus10016304
[exp]
28.6 0.6617
AT2G23970 Class I glutamine amidotransfe... Lus10014635
[exp]
29.0 0.5864
AT5G63640 ENTH/VHS/GAT family protein (.... Lus10012506
[exp]
30.6 0.6990
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Lus10008621
[exp]
33.0 0.6374
AT5G05090 GARP Homeodomain-like superfamily p... Lus10027291
[exp]
36.9 0.6907

Lus10008645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.