Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03760 890 / 0 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G22740 810 / 0 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT1G23480 761 / 0 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT4G13410 727 / 0 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35650 723 / 0 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT1G24070 711 / 0 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT5G16190 656 / 0 ATCSLA11 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A11, cellulose synthase like A11 (.1) AT3G56000 655 / 0 ATCSLA14 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, cellulose synthase like A14 (.1) AT4G16590 561 / 0 ATCSLA1, ATCSLA01 CELLULOSE SYNTHASE-LIKE A1, cellulose synthase-like A01 (.1) AT4G31590 434 / 2e-145 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035580 [exp] 981 / 0 AT5G03760 805 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 779 / 0 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10020539 [exp] 558 / 0 AT5G22740 612 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10025886 [exp] 432 / 1e-144 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10018651 [exp] 429 / 2e-144 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10007715 [exp] 428 / 1e-143 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10026923 [exp] 427 / 1e-142 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 424 / 2e-142 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10038217 [exp] 419 / 5e-142 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116900 [exp] 912 / 0 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 882 / 0 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 869 / 0 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G189000 [exp] 818 / 0 AT5G22740 927 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.009G149700 [exp] 817 / 0 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.018G009300 [exp] 435 / 9e-146 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 433 / 4e-145 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G114200 [exp] 426 / 3e-142 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.005G146900 [exp] 420 / 8e-140 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G248400 [exp] 412 / 4e-137 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10008646 pacid=23180083 polypeptide=Lus10008646 locus=Lus10008646.g ID=Lus10008646.BGIv1.0 annot-version=v1.0 ATGGACCAGCTAAAGGTGATACCGGAGTCGTACGGGTCGACCCGGCCGGATATGCAATTGTCCATGGTGTGGGACCAGATCAAAGCTCCGCTGATCGTCC CTTTGCTCCGCCTCTCCGTCGCCGTTTGCTTGATCATGTCGGTGATGCTCTTCGTGGAGCGAGTCTACATGGGTGTCGTCATCATCCTCATCAAGCTATT CGGCCGCCGGCCGGAGAAGCGGTTCAAATGGGAACCGATGAAGGACGACGTCGAGCTCGGTAACGCCGTTTACCCCATGGTCCTCGTTCAAATCCCAATG TACAACGAACGTGAGGTGTACCAACTCTCAATCGGAGCTGCTTGCGGACTATCATGGCCGTCTGACCGGATTATAATTCAAGTACTAGACGACTCGACCG ATCCAGCCATTAAGGATATGGTCGAGCTAGAGTGCCAAAGGTGGGCAAGCAAAGGGATCAACATTAAGTACGAAATTAGGGACAATAGAAACGGGTACAA AGCAGGGGCGCTAAAGGAAGGAATGAAGAGGAGCTACGTCAAGAATTGCGACTACGTGGCAATTTTTGATGCCGATTTTCAACCCGAGCCCGATTTCCTG TGCCGGACGGTTCCTTTCCTGGTTCATAACTCGGACATCGGTCTGGTTCAAGCTCGTTGGAAATTCGTGAATGCTGACGAATGCCTGATGACAAGGATGC AAGAGATGTCTCTGAACTACCACTTCTCCGTCGAGCAAGAAGTCGGGTCCACCACCTATGCTTTCTTTGGCTTCAACGGAACCGCCGGCCTGTGGAGAAT CGACGCACTGAATGAAGCCGGCGGGTGGAAAGACAGAACCACCGTGGAAGACATGGACCTCGCTGTCCGTGCCAGTCTTAAGGGCTGGAAGTTTTTGTAC CTCGACGACCTTCGGGTGAAAAGTGAGCTACCTAGTACATTCAAGGCTTACCGTTACCAACAACATAGATGGTCGTGTGGTCCAGCTAACCTCTTCAGGA AAATGGTCAAGGAAATCGTCATGAACAAGAAAGTGACATTGTGGAAGAAAGTTCATGTGATCTACAGTTTCTTCTTCGTCCGGAAGATCGTAGCCCACAT AATCACGTTCGTGTTCTACTGCGCCGTTTTGCCCGCAACTGTTTTGGTCCCTGAAGTTCAGGTTCCTAAGTGGGGTCTCGTCTACATTCCCTCCATCATC ACAGTCCTCAACTCGGTCGGTACCCCTAGGTCGTTGCATTTGGTGATATTCTGGATCGTGTTCGAAAACGTCATATCTCTCCATCGTACCAAGGCCACAT TCATTGGCTTGTTCGAGGCAGGGAGAGTGAATGAATGGATCGTGACGGAGAAACTAGGCGATGCCCTCAAGGCCAAATCCACCAAGGCCCCTAAGAAGCC TCGATTCCGCCTCGGAGAAAGGCTTCATGTGTTGGAGCTAATGACGGGGTGTTACTTACTGTTCTGCGGACTGTACGACTTAGCGTTCGGACAGTACCAT TTCTATCTCTACTTGTTCGTCCAAGCCGCCGCTTTCTTCATCATCGGGGCGGGTTACGTCGGCACCTTCGTCCCCCATTCTTGA
AA sequence Show only first row Show all	>Lus10008646 pacid=23180083 polypeptide=Lus10008646 locus=Lus10008646.g ID=Lus10008646.BGIv1.0 annot-version=v1.0 MDQLKVIPESYGSTRPDMQLSMVWDQIKAPLIVPLLRLSVAVCLIMSVMLFVERVYMGVVIILIKLFGRRPEKRFKWEPMKDDVELGNAVYPMVLVQIPM YNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKDMVELECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKNCDYVAIFDADFQPEPDFL CRTVPFLVHNSDIGLVQARWKFVNADECLMTRMQEMSLNYHFSVEQEVGSTTYAFFGFNGTAGLWRIDALNEAGGWKDRTTVEDMDLAVRASLKGWKFLY LDDLRVKSELPSTFKAYRYQQHRWSCGPANLFRKMVKEIVMNKKVTLWKKVHVIYSFFFVRKIVAHIITFVFYCAVLPATVLVPEVQVPKWGLVYIPSII TVLNSVGTPRSLHLVIFWIVFENVISLHRTKATFIGLFEAGRVNEWIVTEKLGDALKAKSTKAPKKPRFRLGERLHVLELMTGCYLLFCGLYDLAFGQYH FYLYLFVQAAAFFIIGAGYVGTFVPHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	1.0	0.9467
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	4.6	0.8930
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	5.7	0.8972
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	6.7	0.8769
AT4G37820			unknown protein		Lus10019253 [exp]	7.7	0.8726
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	8.7	0.8845
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	9.5	0.8748
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	10.6	0.8573
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	15.5	0.8430
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	18.3	0.8747

Compare expression of checked genes

Lus10008646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.